Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00085 and AZOBR_RS00090 are separated by 161 nucleotides AZOBR_RS00090 and AZOBR_RS00095 are separated by 141 nucleotides
AZOBR_RS00085: AZOBR_RS00085 - histidine kinase, at 6,115 to 7,206
_RS00085
AZOBR_RS00090: AZOBR_RS00090 - hypothetical protein, at 7,368 to 8,156
_RS00090
AZOBR_RS00095: AZOBR_RS00095 - MFS transporter permease, at 8,298 to 9,482
_RS00095
Position (kb) 7
8
9 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 7.233 kb on + strand at 7.235 kb on + strand at 7.310 kb on - strand at 7.310 kb on - strand at 7.392 kb on + strand at 7.394 kb on + strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.395 kb on - strand at 7.403 kb on + strand at 7.404 kb on - strand at 7.404 kb on - strand at 7.710 kb on + strand, within AZOBR_RS00090 at 7.710 kb on + strand, within AZOBR_RS00090 at 7.710 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.013 kb on + strand, within AZOBR_RS00090 at 8.014 kb on - strand, within AZOBR_RS00090 at 8.014 kb on - strand, within AZOBR_RS00090 at 8.258 kb on - strand at 8.377 kb on - strand at 8.377 kb on - strand at 8.485 kb on - strand, within AZOBR_RS00095 at 8.544 kb on + strand, within AZOBR_RS00095 at 8.544 kb on + strand, within AZOBR_RS00095 at 8.544 kb on + strand, within AZOBR_RS00095 at 8.703 kb on + strand, within AZOBR_RS00095 at 8.703 kb on + strand, within AZOBR_RS00095 at 8.704 kb on - strand, within AZOBR_RS00095 at 8.907 kb on + strand, within AZOBR_RS00095
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 7,233 + -1.8 7,235 + +0.2 7,310 - +0.1 7,310 - -0.4 7,392 + +0.1 7,394 + -0.2 7,395 - -0.1 7,395 - -0.6 7,395 - +0.2 7,395 - +0.9 7,403 + -0.4 7,404 - -0.1 7,404 - -3.0 7,710 + AZOBR_RS00090 0.43 -3.5 7,710 + AZOBR_RS00090 0.43 -2.7 7,710 + AZOBR_RS00090 0.43 -2.0 8,013 + AZOBR_RS00090 0.82 +0.2 8,013 + AZOBR_RS00090 0.82 +0.6 8,013 + AZOBR_RS00090 0.82 +0.8 8,014 - AZOBR_RS00090 0.82 +0.5 8,014 - AZOBR_RS00090 0.82 +1.1 8,258 - -2.4 8,377 - -1.0 8,377 - -0.8 8,485 - AZOBR_RS00095 0.16 +1.5 8,544 + AZOBR_RS00095 0.21 -4.2 8,544 + AZOBR_RS00095 0.21 +0.8 8,544 + AZOBR_RS00095 0.21 +0.5 8,703 + AZOBR_RS00095 0.34 +0.9 8,703 + AZOBR_RS00095 0.34 -0.7 8,704 - AZOBR_RS00095 0.34 -0.1 8,907 + AZOBR_RS00095 0.51 +1.6
Or see this region's nucleotide sequence