Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_28140

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_28130 and AO353_28135 overlap by 1 nucleotidesAO353_28135 and AO353_28140 are separated by 5 nucleotidesAO353_28140 and AO353_28145 are separated by 147 nucleotidesAO353_28145 and AO353_28150 are separated by 26 nucleotides AO353_28130: AO353_28130 - permease, at 6,132,543 to 6,133,556 _28130 AO353_28135: AO353_28135 - nickel permease, at 6,133,556 to 6,134,254 _28135 AO353_28140: AO353_28140 - ABC transporter permease, at 6,134,260 to 6,134,973 _28140 AO353_28145: AO353_28145 - amino acid ABC transporter substrate-binding protein, at 6,135,121 to 6,135,903 _28145 AO353_28150: AO353_28150 - arginine aminotransferase, at 6,135,930 to 6,137,933 _28150 Position (kb) 6134 6135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 6133.288 kb on + strand, within AO353_28130at 6133.288 kb on + strand, within AO353_28130at 6133.288 kb on + strand, within AO353_28130at 6133.288 kb on + strand, within AO353_28130at 6133.289 kb on - strand, within AO353_28130at 6133.289 kb on - strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.291 kb on + strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.292 kb on - strand, within AO353_28130at 6133.392 kb on + strand, within AO353_28130at 6133.447 kb on + strand, within AO353_28130at 6133.448 kb on - strand, within AO353_28130at 6133.557 kb on + strandat 6133.557 kb on + strandat 6133.557 kb on + strandat 6133.558 kb on - strandat 6133.558 kb on - strandat 6133.558 kb on - strandat 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.635 kb on + strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.636 kb on - strand, within AO353_28135at 6133.665 kb on + strand, within AO353_28135at 6133.917 kb on + strand, within AO353_28135at 6133.917 kb on + strand, within AO353_28135at 6133.917 kb on + strand, within AO353_28135at 6133.917 kb on + strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.918 kb on - strand, within AO353_28135at 6133.953 kb on + strand, within AO353_28135at 6133.953 kb on + strand, within AO353_28135at 6133.953 kb on + strand, within AO353_28135at 6133.953 kb on + strand, within AO353_28135at 6133.953 kb on + strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.954 kb on - strand, within AO353_28135at 6133.974 kb on + strand, within AO353_28135at 6133.974 kb on + strand, within AO353_28135at 6133.975 kb on - strand, within AO353_28135at 6133.975 kb on - strand, within AO353_28135at 6133.975 kb on - strand, within AO353_28135at 6134.037 kb on + strand, within AO353_28135at 6134.037 kb on + strand, within AO353_28135at 6134.037 kb on + strand, within AO353_28135at 6134.038 kb on - strand, within AO353_28135at 6134.038 kb on - strand, within AO353_28135at 6134.038 kb on - strand, within AO353_28135at 6134.038 kb on - strand, within AO353_28135at 6134.038 kb on - strand, within AO353_28135at 6134.046 kb on + strand, within AO353_28135at 6134.047 kb on - strand, within AO353_28135at 6134.047 kb on - strand, within AO353_28135at 6134.047 kb on - strand, within AO353_28135at 6134.088 kb on + strand, within AO353_28135at 6134.088 kb on + strand, within AO353_28135at 6134.088 kb on + strand, within AO353_28135at 6134.088 kb on + strand, within AO353_28135at 6134.088 kb on + strand, within AO353_28135at 6134.089 kb on - strand, within AO353_28135at 6134.089 kb on - strand, within AO353_28135at 6134.089 kb on - strand, within AO353_28135at 6134.117 kb on - strand, within AO353_28135at 6134.117 kb on - strand, within AO353_28135at 6134.117 kb on - strand, within AO353_28135at 6134.117 kb on - strand, within AO353_28135at 6134.117 kb on - strand, within AO353_28135at 6134.238 kb on - strandat 6134.238 kb on - strandat 6134.289 kb on + strandat 6134.289 kb on + strandat 6134.289 kb on + strandat 6134.290 kb on - strandat 6134.290 kb on - strandat 6134.315 kb on + strandat 6134.315 kb on + strandat 6134.315 kb on + strandat 6134.316 kb on - strandat 6134.316 kb on - strandat 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.339 kb on + strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.340 kb on - strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.342 kb on + strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.343 kb on - strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.363 kb on + strand, within AO353_28140at 6134.364 kb on - strand, within AO353_28140at 6134.364 kb on - strand, within AO353_28140at 6134.375 kb on + strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.376 kb on - strand, within AO353_28140at 6134.411 kb on + strand, within AO353_28140at 6134.411 kb on + strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.412 kb on - strand, within AO353_28140at 6134.499 kb on - strand, within AO353_28140at 6134.624 kb on + strand, within AO353_28140at 6134.625 kb on - strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.735 kb on + strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.736 kb on - strand, within AO353_28140at 6134.738 kb on + strand, within AO353_28140at 6134.738 kb on + strand, within AO353_28140at 6134.739 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.790 kb on - strand, within AO353_28140at 6134.888 kb on - strand, within AO353_28140at 6135.109 kb on + strandat 6135.109 kb on + strandat 6135.109 kb on + strandat 6135.110 kb on - strandat 6135.110 kb on - strandat 6135.122 kb on + strandat 6135.123 kb on - strandat 6135.152 kb on + strandat 6135.173 kb on + strandat 6135.174 kb on - strandat 6135.281 kb on + strand, within AO353_28145at 6135.281 kb on + strand, within AO353_28145at 6135.416 kb on + strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.417 kb on - strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.419 kb on + strand, within AO353_28145at 6135.420 kb on - strand, within AO353_28145at 6135.443 kb on + strand, within AO353_28145at 6135.443 kb on + strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.444 kb on - strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.446 kb on + strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.447 kb on - strand, within AO353_28145at 6135.459 kb on - strand, within AO353_28145at 6135.518 kb on + strand, within AO353_28145at 6135.570 kb on - strand, within AO353_28145at 6135.570 kb on - strand, within AO353_28145at 6135.572 kb on + strand, within AO353_28145at 6135.635 kb on - strand, within AO353_28145at 6135.635 kb on - strand, within AO353_28145at 6135.856 kb on + strandat 6135.923 kb on + strandat 6135.924 kb on - strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.928 kb on + strandat 6135.929 kb on - strandat 6135.929 kb on - strandat 6135.929 kb on - strandat 6135.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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6,133,288 + AO353_28130 0.73 +0.1
6,133,288 + AO353_28130 0.73 +0.7
6,133,288 + AO353_28130 0.73 +0.3
6,133,288 + AO353_28130 0.73 +0.2
6,133,289 - AO353_28130 0.74 +1.0
6,133,289 - AO353_28130 0.74 +0.3
6,133,291 + AO353_28130 0.74 +0.1
6,133,291 + AO353_28130 0.74 +0.2
6,133,291 + AO353_28130 0.74 +1.4
6,133,291 + AO353_28130 0.74 +1.2
6,133,291 + AO353_28130 0.74 +0.1
6,133,291 + AO353_28130 0.74 +0.0
6,133,292 - AO353_28130 0.74 -0.4
6,133,292 - AO353_28130 0.74 -0.7
6,133,292 - AO353_28130 0.74 +0.9
6,133,292 - AO353_28130 0.74 -0.8
6,133,292 - AO353_28130 0.74 +1.2
6,133,292 - AO353_28130 0.74 +0.2
6,133,392 + AO353_28130 0.84 +0.2
6,133,447 + AO353_28130 0.89 +0.3
6,133,448 - AO353_28130 0.89 -0.4
6,133,557 + -1.0
6,133,557 + -1.1
6,133,557 + +0.7
6,133,558 - +0.8
6,133,558 - -1.3
6,133,558 - -0.7
6,133,635 + AO353_28135 0.11 +0.2
6,133,635 + AO353_28135 0.11 -1.6
6,133,635 + AO353_28135 0.11 +0.7
6,133,635 + AO353_28135 0.11 +0.8
6,133,635 + AO353_28135 0.11 -0.2
6,133,635 + AO353_28135 0.11 +0.7
6,133,635 + AO353_28135 0.11 +0.0
6,133,635 + AO353_28135 0.11 +0.0
6,133,635 + AO353_28135 0.11 +1.0
6,133,635 + AO353_28135 0.11 -0.3
6,133,635 + AO353_28135 0.11 -0.2
6,133,635 + AO353_28135 0.11 +1.2
6,133,636 - AO353_28135 0.11 -0.6
6,133,636 - AO353_28135 0.11 -0.3
6,133,636 - AO353_28135 0.11 +0.1
6,133,636 - AO353_28135 0.11 +0.1
6,133,636 - AO353_28135 0.11 +0.5
6,133,636 - AO353_28135 0.11 -0.2
6,133,636 - AO353_28135 0.11 -0.7
6,133,636 - AO353_28135 0.11 -0.2
6,133,636 - AO353_28135 0.11 -0.5
6,133,665 + AO353_28135 0.16 +0.6
6,133,917 + AO353_28135 0.52 -0.3
6,133,917 + AO353_28135 0.52 +0.7
6,133,917 + AO353_28135 0.52 +0.4
6,133,917 + AO353_28135 0.52 +0.6
6,133,918 - AO353_28135 0.52 -0.3
6,133,918 - AO353_28135 0.52 -0.3
6,133,918 - AO353_28135 0.52 +0.1
6,133,918 - AO353_28135 0.52 +0.4
6,133,918 - AO353_28135 0.52 +1.1
6,133,918 - AO353_28135 0.52 +0.4
6,133,953 + AO353_28135 0.57 +0.0
6,133,953 + AO353_28135 0.57 +0.4
6,133,953 + AO353_28135 0.57 +0.3
6,133,953 + AO353_28135 0.57 +0.5
6,133,953 + AO353_28135 0.57 +0.3
6,133,954 - AO353_28135 0.57 +0.5
6,133,954 - AO353_28135 0.57 -0.4
6,133,954 - AO353_28135 0.57 -0.1
6,133,954 - AO353_28135 0.57 -0.2
6,133,954 - AO353_28135 0.57 -2.2
6,133,954 - AO353_28135 0.57 -1.1
6,133,954 - AO353_28135 0.57 +0.3
6,133,954 - AO353_28135 0.57 -0.2
6,133,954 - AO353_28135 0.57 -0.7
6,133,954 - AO353_28135 0.57 +0.1
6,133,974 + AO353_28135 0.60 -0.2
6,133,974 + AO353_28135 0.60 -0.2
6,133,975 - AO353_28135 0.60 +1.9
6,133,975 - AO353_28135 0.60 -0.0
6,133,975 - AO353_28135 0.60 -1.7
6,134,037 + AO353_28135 0.69 -1.6
6,134,037 + AO353_28135 0.69 +0.4
6,134,037 + AO353_28135 0.69 +1.0
6,134,038 - AO353_28135 0.69 -0.4
6,134,038 - AO353_28135 0.69 -0.3
6,134,038 - AO353_28135 0.69 -0.4
6,134,038 - AO353_28135 0.69 -0.4
6,134,038 - AO353_28135 0.69 +0.4
6,134,046 + AO353_28135 0.70 +0.1
6,134,047 - AO353_28135 0.70 +0.6
6,134,047 - AO353_28135 0.70 +1.3
6,134,047 - AO353_28135 0.70 +0.4
6,134,088 + AO353_28135 0.76 +1.6
6,134,088 + AO353_28135 0.76 +0.7
6,134,088 + AO353_28135 0.76 -1.2
6,134,088 + AO353_28135 0.76 +0.2
6,134,088 + AO353_28135 0.76 +0.2
6,134,089 - AO353_28135 0.76 +0.9
6,134,089 - AO353_28135 0.76 +0.6
6,134,089 - AO353_28135 0.76 -1.4
6,134,117 - AO353_28135 0.80 +0.2
6,134,117 - AO353_28135 0.80 +0.6
6,134,117 - AO353_28135 0.80 +1.0
6,134,117 - AO353_28135 0.80 -0.1
6,134,117 - AO353_28135 0.80 +1.0
6,134,238 - +1.0
6,134,238 - -0.2
6,134,289 + -0.2
6,134,289 + -0.8
6,134,289 + +0.3
6,134,290 - -0.0
6,134,290 - -0.1
6,134,315 + +0.6
6,134,315 + -1.6
6,134,315 + +1.3
6,134,316 - +0.3
6,134,316 - +1.4
6,134,339 + AO353_28140 0.11 +0.0
6,134,339 + AO353_28140 0.11 -1.4
6,134,339 + AO353_28140 0.11 -0.8
6,134,339 + AO353_28140 0.11 -0.7
6,134,340 - AO353_28140 0.11 +0.0
6,134,340 - AO353_28140 0.11 +0.6
6,134,340 - AO353_28140 0.11 +0.7
6,134,340 - AO353_28140 0.11 -0.6
6,134,340 - AO353_28140 0.11 -1.0
6,134,340 - AO353_28140 0.11 -0.5
6,134,340 - AO353_28140 0.11 +0.1
6,134,342 + AO353_28140 0.11 +0.0
6,134,342 + AO353_28140 0.11 -0.7
6,134,342 + AO353_28140 0.11 +0.6
6,134,342 + AO353_28140 0.11 -1.5
6,134,342 + AO353_28140 0.11 +0.2
6,134,342 + AO353_28140 0.11 -0.5
6,134,343 - AO353_28140 0.12 +0.4
6,134,343 - AO353_28140 0.12 +0.3
6,134,343 - AO353_28140 0.12 +0.6
6,134,343 - AO353_28140 0.12 -0.4
6,134,343 - AO353_28140 0.12 -1.5
6,134,343 - AO353_28140 0.12 -0.0
6,134,343 - AO353_28140 0.12 +0.2
6,134,343 - AO353_28140 0.12 +0.3
6,134,363 + AO353_28140 0.14 -0.1
6,134,363 + AO353_28140 0.14 +0.6
6,134,363 + AO353_28140 0.14 +1.0
6,134,364 - AO353_28140 0.15 +0.5
6,134,364 - AO353_28140 0.15 +0.6
6,134,375 + AO353_28140 0.16 +0.2
6,134,376 - AO353_28140 0.16 +0.1
6,134,376 - AO353_28140 0.16 +0.4
6,134,376 - AO353_28140 0.16 -0.2
6,134,411 + AO353_28140 0.21 -0.1
6,134,411 + AO353_28140 0.21 -0.4
6,134,412 - AO353_28140 0.21 -1.4
6,134,412 - AO353_28140 0.21 +0.0
6,134,412 - AO353_28140 0.21 -0.6
6,134,499 - AO353_28140 0.33 +0.4
6,134,624 + AO353_28140 0.51 -0.4
6,134,625 - AO353_28140 0.51 -1.1
6,134,735 + AO353_28140 0.67 -0.4
6,134,735 + AO353_28140 0.67 -0.3
6,134,735 + AO353_28140 0.67 -0.1
6,134,735 + AO353_28140 0.67 -0.4
6,134,735 + AO353_28140 0.67 -1.0
6,134,736 - AO353_28140 0.67 -0.6
6,134,736 - AO353_28140 0.67 +0.5
6,134,736 - AO353_28140 0.67 +0.3
6,134,736 - AO353_28140 0.67 -0.3
6,134,736 - AO353_28140 0.67 +0.4
6,134,736 - AO353_28140 0.67 -3.4
6,134,736 - AO353_28140 0.67 -1.1
6,134,736 - AO353_28140 0.67 -0.7
6,134,738 + AO353_28140 0.67 -0.4
6,134,738 + AO353_28140 0.67 -1.1
6,134,739 - AO353_28140 0.67 +1.0
6,134,790 - AO353_28140 0.74 +0.4
6,134,790 - AO353_28140 0.74 -0.9
6,134,790 - AO353_28140 0.74 -0.9
6,134,888 - AO353_28140 0.88 +0.4
6,135,109 + +1.8
6,135,109 + -0.3
6,135,109 + -0.2
6,135,110 - +0.7
6,135,110 - -1.7
6,135,122 + +0.1
6,135,123 - -0.8
6,135,152 + -0.9
6,135,173 + -0.8
6,135,174 - -1.0
6,135,281 + AO353_28145 0.20 -0.7
6,135,281 + AO353_28145 0.20 -0.9
6,135,416 + AO353_28145 0.38 +0.3
6,135,417 - AO353_28145 0.38 -0.7
6,135,417 - AO353_28145 0.38 +0.3
6,135,417 - AO353_28145 0.38 -1.1
6,135,417 - AO353_28145 0.38 -0.8
6,135,417 - AO353_28145 0.38 -0.2
6,135,419 + AO353_28145 0.38 +1.1
6,135,419 + AO353_28145 0.38 +1.4
6,135,419 + AO353_28145 0.38 -0.5
6,135,419 + AO353_28145 0.38 +1.4
6,135,420 - AO353_28145 0.38 +0.3
6,135,443 + AO353_28145 0.41 -0.5
6,135,443 + AO353_28145 0.41 +0.1
6,135,444 - AO353_28145 0.41 -0.6
6,135,444 - AO353_28145 0.41 +0.5
6,135,444 - AO353_28145 0.41 -0.5
6,135,444 - AO353_28145 0.41 -0.6
6,135,446 + AO353_28145 0.42 +0.4
6,135,446 + AO353_28145 0.42 +0.3
6,135,446 + AO353_28145 0.42 -2.0
6,135,446 + AO353_28145 0.42 -0.2
6,135,447 - AO353_28145 0.42 +0.4
6,135,447 - AO353_28145 0.42 -1.2
6,135,447 - AO353_28145 0.42 +0.1
6,135,447 - AO353_28145 0.42 -0.0
6,135,459 - AO353_28145 0.43 -2.7
6,135,518 + AO353_28145 0.51 +0.1
6,135,570 - AO353_28145 0.57 +0.9
6,135,570 - AO353_28145 0.57 +0.3
6,135,572 + AO353_28145 0.58 +0.0
6,135,635 - AO353_28145 0.66 +0.0
6,135,635 - AO353_28145 0.66 +0.5
6,135,856 + +0.7
6,135,923 + +1.0
6,135,924 - +0.0
6,135,928 + -0.4
6,135,928 + -2.2
6,135,928 + -0.9
6,135,928 + +0.5
6,135,929 - -0.0
6,135,929 - -0.3
6,135,929 - -0.6
6,135,929 - +1.6

Or see this region's nucleotide sequence