Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004928

Experiment: D-Glucuronic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucuronic Acid (C)
1,143,154	+		ABIE53_004927	0.40	+0.0
1,143,186	+		ABIE53_004927	0.42	-0.7
1,143,187	-		ABIE53_004927	0.42	-0.6
1,143,187	-		ABIE53_004927	0.42	-0.3
1,143,262	+		ABIE53_004927	0.47	-0.8
1,143,263	-		ABIE53_004927	0.47	-0.6
1,143,319	+		ABIE53_004927	0.51	-0.3
1,143,319	+		ABIE53_004927	0.51	+0.1
1,143,320	-		ABIE53_004927	0.51	-0.4
1,143,420	+		ABIE53_004927	0.57	+0.0
1,143,491	+		ABIE53_004927	0.62	-0.6
1,143,491	+		ABIE53_004927	0.62	+1.4
1,143,491	+		ABIE53_004927	0.62	+1.0
1,143,491	+		ABIE53_004927	0.62	-0.5
1,143,491	+		ABIE53_004927	0.62	-1.4
1,143,491	+		ABIE53_004927	0.62	-1.3
1,143,491	+		ABIE53_004927	0.62	+0.9
1,143,491	+		ABIE53_004927	0.62	-1.1
1,143,491	+		ABIE53_004927	0.62	-0.3
1,143,491	+		ABIE53_004927	0.62	+1.1
1,143,491	+		ABIE53_004927	0.62	+3.1
1,143,492	-		ABIE53_004927	0.62	-0.4
1,143,492	-		ABIE53_004927	0.62	+1.3
1,143,492	-		ABIE53_004927	0.62	-1.3
1,143,492	-		ABIE53_004927	0.62	-0.1
1,143,492	-		ABIE53_004927	0.62	-1.1
1,143,492	-		ABIE53_004927	0.62	-0.2
1,143,492	-		ABIE53_004927	0.62	-0.8
1,143,492	-		ABIE53_004927	0.62	+0.4
1,143,492	-		ABIE53_004927	0.62	-0.3
1,143,492	-		ABIE53_004927	0.62	+0.1
1,143,492	-		ABIE53_004927	0.62	-2.2
1,143,492	-		ABIE53_004927	0.62	+0.0
1,143,492	-		ABIE53_004927	0.62	+0.8
1,143,492	-		ABIE53_004927	0.62	-0.2
1,143,806	+		ABIE53_004927	0.82	+0.4
1,143,807	-		ABIE53_004927	0.82	-1.8
1,143,807	-		ABIE53_004927	0.82	+1.0
1,143,858	-		ABIE53_004927	0.86	-0.6
1,143,878	-		ABIE53_004927	0.87	-0.1
1,144,007	+				+1.4
1,144,007	+				-0.5
1,144,008	-				-0.7
1,144,008	-				-0.9
1,144,192	+				+0.9
1,144,199	+				-0.3
1,144,199	+				+0.4
1,144,199	+				-2.3
1,144,199	+				+0.2
1,144,199	+				-0.1
1,144,200	-				-1.6
1,144,200	-				-0.7
1,144,200	-				+0.1
1,144,200	-				+1.3
1,144,205	+				-0.2
1,144,205	+				-0.1
1,144,205	+				+1.2
1,144,206	-				+0.4
1,144,206	-				+0.4
1,144,218	+				+0.0
1,144,231	+				+1.0
1,144,231	+				-0.3
1,144,232	-				+0.7
1,144,343	+		ABIE53_004928	0.19	-1.3
1,144,344	-		ABIE53_004928	0.19	+0.7
1,144,376	+		ABIE53_004928	0.21	+2.6
1,144,377	-		ABIE53_004928	0.21	-1.5
1,144,415	+		ABIE53_004928	0.25	+2.0
1,144,415	+		ABIE53_004928	0.25	+1.2
1,144,416	-		ABIE53_004928	0.25	+0.8
1,144,426	-		ABIE53_004928	0.25	-2.1
1,144,444	+		ABIE53_004928	0.27	-0.9
1,144,444	+		ABIE53_004928	0.27	+0.7
1,144,444	+		ABIE53_004928	0.27	-2.3
1,144,445	-		ABIE53_004928	0.27	-2.0
1,144,445	-		ABIE53_004928	0.27	-1.4
1,144,448	+		ABIE53_004928	0.27	+0.0
1,144,448	+		ABIE53_004928	0.27	+1.6
1,144,448	+		ABIE53_004928	0.27	+0.0
1,144,449	-		ABIE53_004928	0.27	+1.0
1,144,487	-		ABIE53_004928	0.30	-0.7
1,144,617	+		ABIE53_004928	0.41	-1.0
1,144,617	+		ABIE53_004928	0.41	+3.4
1,144,617	+		ABIE53_004928	0.41	+0.4
1,144,617	+		ABIE53_004928	0.41	+0.3
1,144,744	-		ABIE53_004928	0.51	-1.1
1,144,744	-		ABIE53_004928	0.51	+0.0
1,144,835	+		ABIE53_004928	0.59	+0.7
1,144,835	+		ABIE53_004928	0.59	-1.4
1,144,835	+		ABIE53_004928	0.59	-0.1
1,144,836	-		ABIE53_004928	0.59	-1.0
1,144,946	+		ABIE53_004928	0.68	-1.9
1,144,946	+		ABIE53_004928	0.68	+2.4
1,144,947	-		ABIE53_004928	0.68	+2.6
1,144,947	-		ABIE53_004928	0.68	-0.1
1,144,947	-		ABIE53_004928	0.68	+2.0
1,144,947	-		ABIE53_004928	0.68	-0.4
1,144,947	-		ABIE53_004928	0.68	+0.8
1,144,947	-		ABIE53_004928	0.68	+1.4
1,144,948	+		ABIE53_004928	0.68	-1.7
1,145,026	-		ABIE53_004928	0.75	-0.1
1,145,026	-		ABIE53_004928	0.75	-0.6
1,145,028	-		ABIE53_004928	0.75	+0.4
1,145,033	-		ABIE53_004928	0.75	+0.4
1,145,033	-		ABIE53_004928	0.75	+0.2
1,145,237	+				+1.3
1,145,237	+				-0.3
1,145,237	+				-2.1
1,145,237	+				+2.6
1,145,238	-				-0.8
1,145,238	-				-0.4
1,145,238	-				-1.2
1,145,238	-				+0.0
1,145,238	-				+0.4
1,145,397	-				+1.4
1,145,403	-				-1.3
1,145,419	+				-1.1
1,145,420	-				+2.3
1,145,430	+				+0.0
1,145,535	+				+0.5
1,145,577	+				-0.3
1,145,577	+				-0.3
1,145,578	-				-0.3
1,145,578	-				+1.3
1,145,578	-				+0.7
1,145,612	+				+0.4
1,145,623	+				+0.8
1,145,624	-				-1.0
1,145,640	-				+0.6
1,145,640	-				-0.2
1,145,682	-				-0.3
1,145,682	-				+1.8
1,145,686	+				-1.0
1,145,687	-				-0.1
1,145,687	-				+3.6
1,145,687	-				+0.4
1,145,745	-		ABIE53_004929	0.11	+2.0
1,145,892	-		ABIE53_004929	0.22	-1.4
1,145,894	+		ABIE53_004929	0.22	+1.0
1,145,894	+		ABIE53_004929	0.22	-2.1
1,145,895	-		ABIE53_004929	0.22	+1.0
1,145,895	-		ABIE53_004929	0.22	+1.1
1,145,945	+		ABIE53_004929	0.26	-1.0
1,145,946	-		ABIE53_004929	0.26	-0.3
1,145,967	+		ABIE53_004929	0.27	+2.0
1,145,968	-		ABIE53_004929	0.27	+0.7
1,145,968	-		ABIE53_004929	0.27	+1.4
1,145,975	+		ABIE53_004929	0.28	-2.7
1,146,015	+		ABIE53_004929	0.31	+0.4
1,146,015	+		ABIE53_004929	0.31	-0.8
1,146,015	+		ABIE53_004929	0.31	-0.3
1,146,151	+		ABIE53_004929	0.41	-0.6
1,146,151	+		ABIE53_004929	0.41	-0.3
1,146,151	+		ABIE53_004929	0.41	-0.9
1,146,152	-		ABIE53_004929	0.41	-1.7
1,146,152	-		ABIE53_004929	0.41	+0.0
1,146,155	+		ABIE53_004929	0.41	+1.5
1,146,155	+		ABIE53_004929	0.41	+1.4
1,146,155	+		ABIE53_004929	0.41	+1.4
1,146,155	+		ABIE53_004929	0.41	-1.7
1,146,155	+		ABIE53_004929	0.41	+0.0
1,146,156	-		ABIE53_004929	0.42	+4.8
1,146,156	-		ABIE53_004929	0.42	-0.7
1,146,156	-		ABIE53_004929	0.42	-2.2
1,146,156	-		ABIE53_004929	0.42	+0.0
1,146,159	+		ABIE53_004929	0.42	-1.1
1,146,159	+		ABIE53_004929	0.42	+1.3
1,146,159	+		ABIE53_004929	0.42	+0.4
1,146,159	+		ABIE53_004929	0.42	-0.2
1,146,159	+		ABIE53_004929	0.42	-1.3
1,146,159	+		ABIE53_004929	0.42	-1.6
1,146,160	-		ABIE53_004929	0.42	-0.7
1,146,160	-		ABIE53_004929	0.42	+0.0
1,146,160	-		ABIE53_004929	0.42	+1.6
1,146,160	-		ABIE53_004929	0.42	-0.3
1,146,160	-		ABIE53_004929	0.42	-0.7
1,146,244	+		ABIE53_004929	0.48	-0.8
1,146,244	+		ABIE53_004929	0.48	+0.4
1,146,245	-		ABIE53_004929	0.48	+1.4
1,146,245	-		ABIE53_004929	0.48	-1.8
1,146,302	-		ABIE53_004929	0.53	+1.0
1,146,329	+		ABIE53_004929	0.55	+0.6
1,146,335	+		ABIE53_004929	0.55	+0.0
1,146,335	+		ABIE53_004929	0.55	+0.1