Experiment: copper (II) chloride 5 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_13745 and IAI47_13750 are separated by 200 nucleotides IAI47_13750 and IAI47_13755 are separated by 14 nucleotides
IAI47_13745: IAI47_13745 - 2-oxoglutarate dehydrogenase E1 component, at 2,909,785 to 2,912,592
_13745
IAI47_13750: IAI47_13750 - succinate dehydrogenase iron-sulfur subunit, at 2,912,793 to 2,913,509
_13750
IAI47_13755: IAI47_13755 - succinate dehydrogenase flavoprotein subunit, at 2,913,524 to 2,915,290
_13755
Position (kb)
2912
2913
2914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2912.076 kb on + strand, within IAI47_13745 at 2912.077 kb on - strand, within IAI47_13745 at 2912.077 kb on - strand, within IAI47_13745 at 2912.077 kb on - strand, within IAI47_13745 at 2912.171 kb on - strand, within IAI47_13745 at 2912.525 kb on - strand at 2912.529 kb on - strand at 2912.604 kb on - strand at 2912.675 kb on - strand at 2912.675 kb on - strand at 2912.675 kb on - strand at 2912.720 kb on - strand at 2912.720 kb on - strand at 2912.729 kb on - strand at 2912.729 kb on - strand at 2912.729 kb on - strand at 2912.742 kb on - strand at 2912.789 kb on + strand at 2912.790 kb on - strand at 2912.790 kb on - strand at 2912.790 kb on - strand at 2912.790 kb on - strand at 2912.794 kb on + strand at 2912.795 kb on - strand at 2912.795 kb on - strand at 2912.795 kb on - strand at 2912.795 kb on - strand at 2913.063 kb on - strand, within IAI47_13750 at 2913.063 kb on - strand, within IAI47_13750 at 2913.070 kb on + strand, within IAI47_13750 at 2913.070 kb on + strand, within IAI47_13750 at 2913.070 kb on + strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.071 kb on - strand, within IAI47_13750 at 2913.170 kb on - strand, within IAI47_13750 at 2913.179 kb on - strand, within IAI47_13750 at 2913.281 kb on + strand, within IAI47_13750 at 2913.282 kb on - strand, within IAI47_13750 at 2913.285 kb on - strand, within IAI47_13750 at 2913.442 kb on + strand at 2913.443 kb on - strand at 2913.443 kb on - strand at 2913.443 kb on - strand at 2913.443 kb on - strand at 2913.482 kb on - strand at 2913.526 kb on - strand at 2913.528 kb on + strand at 2913.532 kb on + strand at 2913.533 kb on - strand at 2913.615 kb on + strand at 2913.616 kb on - strand at 2913.697 kb on - strand at 2913.760 kb on + strand, within IAI47_13755 at 2913.770 kb on - strand, within IAI47_13755 at 2913.873 kb on - strand, within IAI47_13755 at 2913.938 kb on - strand, within IAI47_13755 at 2913.938 kb on - strand, within IAI47_13755 at 2913.940 kb on + strand, within IAI47_13755 at 2913.941 kb on - strand, within IAI47_13755 at 2913.941 kb on - strand, within IAI47_13755 at 2913.941 kb on - strand, within IAI47_13755 at 2914.021 kb on + strand, within IAI47_13755 at 2914.022 kb on - strand, within IAI47_13755 at 2914.084 kb on + strand, within IAI47_13755 at 2914.116 kb on - strand, within IAI47_13755 at 2914.116 kb on - strand, within IAI47_13755 at 2914.227 kb on + strand, within IAI47_13755 at 2914.227 kb on + strand, within IAI47_13755 at 2914.228 kb on - strand, within IAI47_13755 at 2914.228 kb on - strand, within IAI47_13755
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 5 uM, aerobic remove 2,912,076 + IAI47_13745 0.82 -2.3 2,912,077 - IAI47_13745 0.82 -2.1 2,912,077 - IAI47_13745 0.82 -1.2 2,912,077 - IAI47_13745 0.82 -2.6 2,912,171 - IAI47_13745 0.85 -0.3 2,912,525 - -2.2 2,912,529 - +0.1 2,912,604 - -0.3 2,912,675 - +0.1 2,912,675 - +0.3 2,912,675 - +1.2 2,912,720 - +0.2 2,912,720 - +0.2 2,912,729 - +1.5 2,912,729 - -0.3 2,912,729 - -1.9 2,912,742 - +0.8 2,912,789 + +0.5 2,912,790 - +0.1 2,912,790 - -0.3 2,912,790 - +0.7 2,912,790 - -0.0 2,912,794 + -0.9 2,912,795 - -0.4 2,912,795 - +0.2 2,912,795 - +1.2 2,912,795 - +1.3 2,913,063 - IAI47_13750 0.38 +0.9 2,913,063 - IAI47_13750 0.38 +0.5 2,913,070 + IAI47_13750 0.39 -1.0 2,913,070 + IAI47_13750 0.39 +1.2 2,913,070 + IAI47_13750 0.39 -0.2 2,913,071 - IAI47_13750 0.39 +2.7 2,913,071 - IAI47_13750 0.39 -1.5 2,913,071 - IAI47_13750 0.39 -0.2 2,913,071 - IAI47_13750 0.39 +0.0 2,913,071 - IAI47_13750 0.39 -1.3 2,913,071 - IAI47_13750 0.39 +0.7 2,913,170 - IAI47_13750 0.53 +0.8 2,913,179 - IAI47_13750 0.54 +1.2 2,913,281 + IAI47_13750 0.68 -2.2 2,913,282 - IAI47_13750 0.68 +0.6 2,913,285 - IAI47_13750 0.69 +3.2 2,913,442 + -0.5 2,913,443 - +0.3 2,913,443 - +1.5 2,913,443 - +4.0 2,913,443 - +1.1 2,913,482 - +0.7 2,913,526 - -0.5 2,913,528 + +0.8 2,913,532 + +0.4 2,913,533 - -1.2 2,913,615 + +0.8 2,913,616 - +0.7 2,913,697 - -1.3 2,913,760 + IAI47_13755 0.13 -0.3 2,913,770 - IAI47_13755 0.14 -1.3 2,913,873 - IAI47_13755 0.20 +0.2 2,913,938 - IAI47_13755 0.23 -0.3 2,913,938 - IAI47_13755 0.23 +0.3 2,913,940 + IAI47_13755 0.24 -0.3 2,913,941 - IAI47_13755 0.24 +1.5 2,913,941 - IAI47_13755 0.24 -0.7 2,913,941 - IAI47_13755 0.24 -1.6 2,914,021 + IAI47_13755 0.28 +0.1 2,914,022 - IAI47_13755 0.28 -1.2 2,914,084 + IAI47_13755 0.32 -1.4 2,914,116 - IAI47_13755 0.34 +1.2 2,914,116 - IAI47_13755 0.34 -1.3 2,914,227 + IAI47_13755 0.40 -0.3 2,914,227 + IAI47_13755 0.40 +0.8 2,914,228 - IAI47_13755 0.40 -0.2 2,914,228 - IAI47_13755 0.40 +1.1
Or see this region's nucleotide sequence