Strain Fitness in Pantoea sp. MT58 around IAI47_09720

Experiment: copper (II) chloride 5 uM, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 5 uM, aerobic
2,056,185	+		IAI47_09710	0.36	-0.2
2,056,186	-		IAI47_09710	0.36	-1.1
2,056,186	-		IAI47_09710	0.36	+0.0
2,056,186	-		IAI47_09710	0.36	+0.8
2,056,186	-		IAI47_09710	0.36	+1.1
2,056,186	-		IAI47_09710	0.36	-0.5
2,056,187	+		IAI47_09710	0.36	-0.5
2,056,187	+		IAI47_09710	0.36	-0.5
2,056,187	+		IAI47_09710	0.36	+1.0
2,056,187	+		IAI47_09710	0.36	-0.4
2,056,187	+		IAI47_09710	0.36	-0.9
2,056,188	-		IAI47_09710	0.36	+1.4
2,056,188	-		IAI47_09710	0.36	-2.3
2,056,188	-		IAI47_09710	0.36	-0.9
2,056,188	-		IAI47_09710	0.36	+0.0
2,056,188	-		IAI47_09710	0.36	+0.5
2,056,265	+		IAI47_09710	0.45	+1.0
2,056,266	-		IAI47_09710	0.46	+1.5
2,056,323	-		IAI47_09710	0.52	-0.0
2,056,323	-		IAI47_09710	0.52	+0.4
2,056,323	-		IAI47_09710	0.52	-0.4
2,056,335	+		IAI47_09710	0.54	+0.5
2,056,335	+		IAI47_09710	0.54	+0.5
2,056,335	+		IAI47_09710	0.54	-1.0
2,056,335	+		IAI47_09710	0.54	-0.1
2,056,335	+		IAI47_09710	0.54	+1.1
2,056,335	+		IAI47_09710	0.54	+1.0
2,056,336	-		IAI47_09710	0.54	-0.2
2,056,336	-		IAI47_09710	0.54	-0.7
2,056,336	-		IAI47_09710	0.54	+0.4
2,056,336	-		IAI47_09710	0.54	-0.4
2,056,336	-		IAI47_09710	0.54	+0.0
2,056,365	-		IAI47_09710	0.57	+0.2
2,056,501	+		IAI47_09710	0.73	-0.2
2,056,502	-		IAI47_09710	0.74	+0.5
2,056,502	-		IAI47_09710	0.74	+1.0
2,056,502	-		IAI47_09710	0.74	+0.8
2,056,502	-		IAI47_09710	0.74	+0.4
2,056,565	-		IAI47_09710	0.81	-0.4
2,056,610	+		IAI47_09710	0.86	-0.1
2,056,610	+		IAI47_09710	0.86	+1.4
2,056,610	+		IAI47_09710	0.86	+0.3
2,056,611	-		IAI47_09710	0.86	-0.3
2,056,611	-		IAI47_09710	0.86	-0.5
2,056,611	-		IAI47_09710	0.86	+2.2
2,056,634	+		IAI47_09710	0.89	+0.2
2,056,635	-		IAI47_09710	0.89	+0.0
2,056,712	+				-0.4
2,056,712	+				-1.9
2,056,712	+				+0.5
2,056,712	+				-0.9
2,056,713	-				+0.4
2,056,713	-				-0.3
2,056,723	-				+2.0
2,056,723	-				-0.7
2,056,765	+		IAI47_09715	0.16	-0.0
2,056,765	+		IAI47_09715	0.16	+0.3
2,056,765	+		IAI47_09715	0.16	-0.2
2,056,765	+		IAI47_09715	0.16	+0.6
2,056,834	+		IAI47_09715	0.38	+0.2
2,056,834	+		IAI47_09715	0.38	+0.7
2,056,834	+		IAI47_09715	0.38	+0.3
2,056,834	+		IAI47_09715	0.38	+0.4
2,056,834	+		IAI47_09715	0.38	-0.5
2,056,834	+		IAI47_09715	0.38	-0.9
2,056,834	+		IAI47_09715	0.38	-0.4
2,056,834	+		IAI47_09715	0.38	+0.7
2,056,834	+		IAI47_09715	0.38	+0.3
2,056,834	+		IAI47_09715	0.38	+2.4
2,056,834	+		IAI47_09715	0.38	+0.6
2,056,834	+		IAI47_09715	0.38	+0.2
2,056,834	+		IAI47_09715	0.38	-0.4
2,056,834	+		IAI47_09715	0.38	-1.1
2,056,834	+		IAI47_09715	0.38	-0.6
2,056,834	+		IAI47_09715	0.38	+0.6
2,056,834	+		IAI47_09715	0.38	+1.5
2,056,834	+		IAI47_09715	0.38	-1.4
2,056,835	-		IAI47_09715	0.38	-0.1
2,056,835	-		IAI47_09715	0.38	+0.1
2,056,835	-		IAI47_09715	0.38	+0.8
2,056,835	-		IAI47_09715	0.38	+0.7
2,056,835	-		IAI47_09715	0.38	+1.0
2,056,835	-		IAI47_09715	0.38	+0.3
2,056,835	-		IAI47_09715	0.38	+0.4
2,056,835	-		IAI47_09715	0.38	-1.5
2,056,835	-		IAI47_09715	0.38	+0.5
2,056,835	-		IAI47_09715	0.38	-0.2
2,056,835	-		IAI47_09715	0.38	+1.0
2,056,835	-		IAI47_09715	0.38	+1.4
2,056,835	-		IAI47_09715	0.38	+0.1
2,056,835	-		IAI47_09715	0.38	+0.2
2,056,835	-		IAI47_09715	0.38	-0.5
2,056,835	-		IAI47_09715	0.38	-1.1
2,056,835	-		IAI47_09715	0.38	-0.7
2,056,835	-		IAI47_09715	0.38	+0.4
2,056,835	-		IAI47_09715	0.38	+1.6
2,056,835	-		IAI47_09715	0.38	+0.8
2,056,835	-		IAI47_09715	0.38	+0.2
2,056,835	-		IAI47_09715	0.38	+0.4
2,056,835	-		IAI47_09715	0.38	-0.6
2,056,835	-		IAI47_09715	0.38	-1.4
2,056,835	-		IAI47_09715	0.38	+0.4
2,056,839	+		IAI47_09715	0.40	-0.6
2,056,839	+		IAI47_09715	0.40	-0.5
2,056,839	+		IAI47_09715	0.40	-0.8
2,056,839	+		IAI47_09715	0.40	-0.5
2,056,839	+		IAI47_09715	0.40	-0.5
2,056,839	+		IAI47_09715	0.40	+0.5
2,056,839	+		IAI47_09715	0.40	+0.5
2,056,839	+		IAI47_09715	0.40	-0.5
2,056,839	+		IAI47_09715	0.40	+0.5
2,056,840	-		IAI47_09715	0.40	-0.7
2,056,840	-		IAI47_09715	0.40	-1.5
2,056,840	-		IAI47_09715	0.40	+0.4
2,056,961	+		IAI47_09715	0.78	+0.6
2,056,962	-		IAI47_09715	0.79	-1.0
2,056,962	-		IAI47_09715	0.79	+2.2
2,057,026	+				+0.2
2,057,027	-				-0.5
2,057,064	+				+0.3
2,057,065	-				+1.0
2,057,065	-				+0.5
2,057,071	+				+1.6
2,057,072	-				-2.3
2,057,116	+				-0.8
2,057,116	+				-2.3
2,057,117	-				+0.3
2,057,122	+				-1.0
2,057,122	+				-3.4
2,057,122	+				-0.8
2,057,123	-				+0.1
2,057,123	-				+0.4
2,057,123	-				-0.5
2,057,123	-				-0.4
2,057,123	-				-0.3
2,057,125	+				-2.4
2,057,125	+				-0.4
2,057,125	+				-0.0
2,057,125	+				-2.1
2,057,125	+				-0.8
2,057,126	-				+0.3
2,057,126	-				+0.6
2,057,126	-				+0.5
2,057,126	-				+0.9
2,057,126	-				-1.8
2,057,128	+		IAI47_09720	0.10	-0.4
2,057,129	-		IAI47_09720	0.10	-1.5
2,057,129	-		IAI47_09720	0.10	-0.2
2,057,129	-		IAI47_09720	0.10	-1.0
2,057,129	-		IAI47_09720	0.10	-0.5
2,057,129	-		IAI47_09720	0.10	+0.3
2,057,185	+		IAI47_09720	0.19	+0.9
2,057,185	+		IAI47_09720	0.19	-1.1
2,057,185	+		IAI47_09720	0.19	-1.3
2,057,186	-		IAI47_09720	0.19	-0.4
2,057,186	-		IAI47_09720	0.19	-1.6
2,057,186	-		IAI47_09720	0.19	-0.4
2,057,186	-		IAI47_09720	0.19	-1.9
2,057,186	-		IAI47_09720	0.19	-0.4
2,057,186	-		IAI47_09720	0.19	-2.1
2,057,271	-		IAI47_09720	0.32	-0.5
2,057,271	-		IAI47_09720	0.32	-2.0
2,057,271	-		IAI47_09720	0.32	-0.1
2,057,273	+		IAI47_09720	0.32	-1.2
2,057,274	-		IAI47_09720	0.32	-1.8
2,057,274	-		IAI47_09720	0.32	-1.9
2,057,274	-		IAI47_09720	0.32	+0.2
2,057,274	-		IAI47_09720	0.32	-1.0
2,057,274	-		IAI47_09720	0.32	-0.3
2,057,274	-		IAI47_09720	0.32	+1.0
2,057,274	-		IAI47_09720	0.32	+1.8
2,057,274	-		IAI47_09720	0.32	-0.7
2,057,309	-		IAI47_09720	0.38	-1.8
2,057,356	+		IAI47_09720	0.45	-2.2
2,057,357	-		IAI47_09720	0.45	-0.7
2,057,357	-		IAI47_09720	0.45	-1.4
2,057,357	-		IAI47_09720	0.45	+1.3
2,057,389	+		IAI47_09720	0.50	-2.2
2,057,390	-		IAI47_09720	0.50	-0.8
2,057,390	-		IAI47_09720	0.50	-1.8
2,057,415	+		IAI47_09720	0.54	-0.3
2,057,415	+		IAI47_09720	0.54	-1.1
2,057,446	+		IAI47_09720	0.59	-1.7
2,057,447	-		IAI47_09720	0.59	-0.2
2,057,447	-		IAI47_09720	0.59	-0.4
2,057,447	-		IAI47_09720	0.59	+0.3
2,057,447	-		IAI47_09720	0.59	-0.6
2,057,447	-		IAI47_09720	0.59	-1.9
2,057,457	-		IAI47_09720	0.61	-2.2
2,057,489	+		IAI47_09720	0.65	-2.7
2,057,489	+		IAI47_09720	0.65	-1.7
2,057,490	-		IAI47_09720	0.66	-0.1
2,057,490	-		IAI47_09720	0.66	-0.6
2,057,490	-		IAI47_09720	0.66	-0.7
2,057,490	-		IAI47_09720	0.66	-3.0
2,057,490	-		IAI47_09720	0.66	+1.9
2,057,491	+		IAI47_09720	0.66	-0.6
2,057,491	+		IAI47_09720	0.66	-1.7
2,057,492	-		IAI47_09720	0.66	-1.3
2,057,492	-		IAI47_09720	0.66	+0.7
2,057,492	-		IAI47_09720	0.66	-2.5
2,057,492	-		IAI47_09720	0.66	-0.1
2,057,492	-		IAI47_09720	0.66	+0.6
2,057,492	-		IAI47_09720	0.66	-0.1
2,057,493	+		IAI47_09720	0.66	-1.7
2,057,493	+		IAI47_09720	0.66	-1.0
2,057,493	+		IAI47_09720	0.66	-2.1
2,057,494	-		IAI47_09720	0.66	-0.6
2,057,494	-		IAI47_09720	0.66	-2.2
2,057,494	-		IAI47_09720	0.66	-0.4
2,057,494	-		IAI47_09720	0.66	-1.1
2,057,522	+		IAI47_09720	0.71	+0.6
2,057,527	+		IAI47_09720	0.71	+0.3
2,057,528	-		IAI47_09720	0.71	-0.7
2,057,528	-		IAI47_09720	0.71	-1.6
2,057,528	-		IAI47_09720	0.71	+0.0
2,057,605	-		IAI47_09720	0.83	-0.8
2,057,635	+		IAI47_09720	0.88	-3.3
2,057,665	+				+0.9
2,057,665	+				-0.3
2,057,666	-				-0.6
2,057,666	-				+0.2
2,057,666	-				-2.0
2,057,688	-				-0.6
2,057,688	-				-0.9
2,057,713	+				+0.3
2,057,713	+				+1.4
2,057,713	+				+0.1
2,057,713	+				+0.2
2,057,713	+				+0.4
2,057,713	+				+1.0
2,057,713	+				-0.3
2,057,714	-				-1.9
2,057,714	-				+1.0
2,057,714	-				+1.6
2,057,714	-				-0.1
2,057,714	-				-1.4
2,057,714	-				+1.7
2,057,714	-				+1.0
2,057,714	-				-1.6
2,057,740	+				-2.9
2,057,780	+				-0.3
2,057,837	+				+0.2
2,057,838	-				-0.2
2,057,843	+				-0.2
2,057,843	+				-1.1
2,057,843	+				+0.3
2,057,843	+				-0.6
2,057,844	-				-2.1
2,057,844	-				+0.3
2,057,844	-				+0.1
2,057,869	+				-0.8
2,057,939	-				-1.1
2,057,942	-				+1.3
2,057,978	+				+0.3
2,057,979	-				+0.2
2,057,979	-				+0.9
2,057,979	-				+1.3
2,058,003	-				-0.1
2,058,060	+		IAI47_09725	0.15	+0.4
2,058,061	-		IAI47_09725	0.15	-1.8
2,058,061	-		IAI47_09725	0.15	+1.2
2,058,061	-		IAI47_09725	0.15	-0.7
2,058,061	-		IAI47_09725	0.15	-0.2
2,058,061	-		IAI47_09725	0.15	+1.3
2,058,082	+		IAI47_09725	0.23	-0.4
2,058,083	-		IAI47_09725	0.24	+0.5
2,058,083	-		IAI47_09725	0.24	-1.0
2,058,083	-		IAI47_09725	0.24	+0.4
2,058,083	-		IAI47_09725	0.24	+2.0
2,058,083	-		IAI47_09725	0.24	-0.6
2,058,083	-		IAI47_09725	0.24	+0.8
2,058,083	-		IAI47_09725	0.24	+0.9
2,058,083	-		IAI47_09725	0.24	-0.6
2,058,083	-		IAI47_09725	0.24	-0.7
2,058,114	+		IAI47_09725	0.36	-0.2
2,058,144	-		IAI47_09725	0.47	-0.6
2,058,144	-		IAI47_09725	0.47	+1.0
2,058,144	-		IAI47_09725	0.47	+0.0
2,058,156	+		IAI47_09725	0.52	+0.3
2,058,156	+		IAI47_09725	0.52	-0.3
2,058,157	-		IAI47_09725	0.52	-0.3
2,058,189	+		IAI47_09725	0.65	-0.8
2,058,271	+				+1.8
2,058,271	+				+1.0
2,058,271	+				+1.7
2,058,272	-				-0.7
2,058,272	-				+0.2
2,058,317	-				+0.1
2,058,325	+				+0.0
2,058,325	+				+0.4
2,058,325	+				-0.3
2,058,325	+				+1.2
2,058,326	-				+0.3
2,058,326	-				+1.7
2,058,326	-				-1.9
2,058,328	+				-0.7
2,058,328	+				+0.8
2,058,328	+				+0.4
2,058,329	-				+1.7
2,058,354	+		IAI47_09730	0.14	+0.0
2,058,354	+		IAI47_09730	0.14	-0.4
2,058,354	+		IAI47_09730	0.14	-0.8
2,058,354	+		IAI47_09730	0.14	+0.6
2,058,355	-		IAI47_09730	0.15	-0.6
2,058,400	+		IAI47_09730	0.32	-1.0
2,058,400	+		IAI47_09730	0.32	-0.5
2,058,400	+		IAI47_09730	0.32	+0.3
2,058,400	+		IAI47_09730	0.32	+0.1
2,058,400	+		IAI47_09730	0.32	+1.3
2,058,400	+		IAI47_09730	0.32	-1.0
2,058,400	+		IAI47_09730	0.32	-0.4
2,058,401	-		IAI47_09730	0.33	-0.5
2,058,401	-		IAI47_09730	0.33	-0.2
2,058,401	-		IAI47_09730	0.33	-0.1
2,058,449	-		IAI47_09730	0.51	+0.3
2,058,451	+		IAI47_09730	0.52	-1.6
2,058,451	+		IAI47_09730	0.52	+1.1
2,058,451	+		IAI47_09730	0.52	+0.8
2,058,451	+		IAI47_09730	0.52	-1.2
2,058,452	-		IAI47_09730	0.52	-2.1
2,058,452	-		IAI47_09730	0.52	+1.6
2,058,452	-		IAI47_09730	0.52	-0.2
2,058,452	-		IAI47_09730	0.52	+0.5
2,058,452	-		IAI47_09730	0.52	+0.6
2,058,452	-		IAI47_09730	0.52	-1.5
2,058,566	+				+0.4
2,058,566	+				+0.8
2,058,566	+				-0.2
2,058,566	+				-0.9
2,058,567	-				-0.3
2,058,567	-				+0.5
2,058,567	-				+0.8
2,058,568	+				-0.4
2,058,569	-				-0.2
2,058,569	-				-1.1
2,058,569	-				+0.9
2,058,572	+				-0.3
2,058,572	+				-0.6
2,058,572	+				+0.1
2,058,573	-				-0.0
2,058,573	-				+0.1
2,058,583	+				+0.1
2,058,583	+				+0.7
2,058,583	+				-0.5
2,058,583	+				-0.2
2,058,587	+				-0.2
2,058,587	+				+0.3
2,058,587	+				+1.3
2,058,587	+				+3.3
2,058,587	+				+0.8
2,058,588	-				+0.5
2,058,588	-				+0.2
2,058,588	-				+0.7
2,058,593	+				+1.1
2,058,608	+				+0.8
2,058,609	-				+0.1
2,058,618	+				+0.5
2,058,618	+				-0.1
2,058,619	-				+0.1
2,058,619	-				+1.7
2,058,619	-				+0.3
2,058,619	-				+0.8
2,058,634	+				+0.5
2,058,692	+				-0.5
2,058,692	+				+1.3
2,058,692	+				+0.0
2,058,693	-				-0.8
2,058,693	-				-0.2
2,058,696	+				+0.5
2,058,696	+				-0.9
2,058,696	+				-1.1
2,058,697	-				+0.7
2,058,697	-				-0.8
2,058,697	-				-0.9
2,058,707	-				+1.0