Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07170

Experiment: L-Arabinose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07175 and HMPREF1058_RS07170 are separated by 60 nucleotidesHMPREF1058_RS07170 and HMPREF1058_RS07165 are separated by 250 nucleotidesHMPREF1058_RS07165 and HMPREF1058_RS07160 are separated by 481 nucleotides HMPREF1058_RS07175: HMPREF1058_RS07175 - anthranilate synthase component I family protein, at 294,062 to 295,462 _RS07175 HMPREF1058_RS07170: HMPREF1058_RS07170 - tryptophan synthase subunit beta, at 295,523 to 296,722 _RS07170 HMPREF1058_RS07165: HMPREF1058_RS07165 - YtxH domain-containing protein, at 296,973 to 297,233 _RS07165 HMPREF1058_RS07160: HMPREF1058_RS07160 - DUF308 domain-containing protein, at 297,715 to 298,281 _RS07160 Position (kb) 295 296 297Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 294.908 kb on - strand, within HMPREF1058_RS07175at 294.912 kb on + strand, within HMPREF1058_RS07175at 294.912 kb on + strand, within HMPREF1058_RS07175at 294.913 kb on - strand, within HMPREF1058_RS07175at 294.913 kb on - strand, within HMPREF1058_RS07175at 294.913 kb on - strand, within HMPREF1058_RS07175at 294.917 kb on - strand, within HMPREF1058_RS07175at 295.027 kb on + strand, within HMPREF1058_RS07175at 295.031 kb on + strand, within HMPREF1058_RS07175at 295.037 kb on - strand, within HMPREF1058_RS07175at 295.038 kb on + strand, within HMPREF1058_RS07175at 295.039 kb on - strand, within HMPREF1058_RS07175at 295.039 kb on - strand, within HMPREF1058_RS07175at 295.082 kb on + strand, within HMPREF1058_RS07175at 295.126 kb on - strand, within HMPREF1058_RS07175at 295.397 kb on - strandat 295.408 kb on + strandat 295.446 kb on + strandat 295.447 kb on - strandat 295.480 kb on + strandat 295.481 kb on - strandat 295.561 kb on - strandat 295.607 kb on + strandat 295.607 kb on + strandat 295.607 kb on + strandat 295.608 kb on - strandat 295.829 kb on + strand, within HMPREF1058_RS07170at 295.927 kb on + strand, within HMPREF1058_RS07170at 295.977 kb on - strand, within HMPREF1058_RS07170at 295.979 kb on - strand, within HMPREF1058_RS07170at 295.980 kb on + strand, within HMPREF1058_RS07170at 295.986 kb on + strand, within HMPREF1058_RS07170at 296.019 kb on - strand, within HMPREF1058_RS07170at 296.035 kb on - strand, within HMPREF1058_RS07170at 296.117 kb on - strand, within HMPREF1058_RS07170at 296.158 kb on - strand, within HMPREF1058_RS07170at 296.158 kb on - strand, within HMPREF1058_RS07170at 296.160 kb on + strand, within HMPREF1058_RS07170at 296.160 kb on + strand, within HMPREF1058_RS07170at 296.161 kb on - strand, within HMPREF1058_RS07170at 296.284 kb on + strand, within HMPREF1058_RS07170at 296.316 kb on + strand, within HMPREF1058_RS07170at 296.316 kb on + strand, within HMPREF1058_RS07170at 296.317 kb on - strand, within HMPREF1058_RS07170at 296.413 kb on + strand, within HMPREF1058_RS07170at 296.474 kb on + strand, within HMPREF1058_RS07170at 296.560 kb on - strand, within HMPREF1058_RS07170at 296.570 kb on + strand, within HMPREF1058_RS07170at 296.571 kb on - strand, within HMPREF1058_RS07170at 296.667 kb on + strandat 296.668 kb on - strandat 296.668 kb on - strandat 296.668 kb on - strandat 296.668 kb on - strandat 296.712 kb on + strandat 296.819 kb on + strandat 296.820 kb on - strandat 296.821 kb on + strandat 296.822 kb on - strandat 296.823 kb on + strandat 296.824 kb on - strandat 296.824 kb on - strandat 296.825 kb on + strandat 296.825 kb on + strandat 296.825 kb on + strandat 296.825 kb on + strandat 296.825 kb on + strandat 296.826 kb on - strandat 296.826 kb on - strandat 296.826 kb on - strandat 296.861 kb on - strandat 296.880 kb on + strandat 296.884 kb on + strandat 296.884 kb on + strandat 296.884 kb on + strandat 296.915 kb on - strandat 296.931 kb on - strandat 297.027 kb on + strand, within HMPREF1058_RS07165at 297.027 kb on + strand, within HMPREF1058_RS07165at 297.065 kb on + strand, within HMPREF1058_RS07165at 297.066 kb on - strand, within HMPREF1058_RS07165at 297.124 kb on + strand, within HMPREF1058_RS07165at 297.125 kb on - strand, within HMPREF1058_RS07165at 297.125 kb on - strand, within HMPREF1058_RS07165at 297.125 kb on - strand, within HMPREF1058_RS07165at 297.174 kb on + strand, within HMPREF1058_RS07165at 297.175 kb on - strand, within HMPREF1058_RS07165at 297.239 kb on + strandat 297.307 kb on - strandat 297.327 kb on - strandat 297.352 kb on + strandat 297.353 kb on - strandat 297.454 kb on + strandat 297.509 kb on + strandat 297.510 kb on - strandat 297.528 kb on + strandat 297.529 kb on - strandat 297.544 kb on - strandat 297.550 kb on + strandat 297.560 kb on + strandat 297.561 kb on - strandat 297.566 kb on + strandat 297.639 kb on + strandat 297.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose 20 mM (C)
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294,908 - HMPREF1058_RS07175 0.60 -4.3
294,912 + HMPREF1058_RS07175 0.61 -5.2
294,912 + HMPREF1058_RS07175 0.61 -4.3
294,913 - HMPREF1058_RS07175 0.61 -4.4
294,913 - HMPREF1058_RS07175 0.61 -4.8
294,913 - HMPREF1058_RS07175 0.61 -2.0
294,917 - HMPREF1058_RS07175 0.61 -2.3
295,027 + HMPREF1058_RS07175 0.69 -2.5
295,031 + HMPREF1058_RS07175 0.69 -2.7
295,037 - HMPREF1058_RS07175 0.70 -4.3
295,038 + HMPREF1058_RS07175 0.70 -1.0
295,039 - HMPREF1058_RS07175 0.70 -3.1
295,039 - HMPREF1058_RS07175 0.70 -3.7
295,082 + HMPREF1058_RS07175 0.73 -3.1
295,126 - HMPREF1058_RS07175 0.76 -5.3
295,397 - -1.0
295,408 + -4.0
295,446 + -3.5
295,447 - -1.4
295,480 + -1.7
295,481 - -1.0
295,561 - -0.8
295,607 + -4.9
295,607 + -3.7
295,607 + -4.6
295,608 - -1.4
295,829 + HMPREF1058_RS07170 0.26 -1.4
295,927 + HMPREF1058_RS07170 0.34 -2.8
295,977 - HMPREF1058_RS07170 0.38 -4.1
295,979 - HMPREF1058_RS07170 0.38 -3.3
295,980 + HMPREF1058_RS07170 0.38 -3.7
295,986 + HMPREF1058_RS07170 0.39 -3.5
296,019 - HMPREF1058_RS07170 0.41 -5.2
296,035 - HMPREF1058_RS07170 0.43 -3.9
296,117 - HMPREF1058_RS07170 0.49 -4.5
296,158 - HMPREF1058_RS07170 0.53 -2.0
296,158 - HMPREF1058_RS07170 0.53 -4.5
296,160 + HMPREF1058_RS07170 0.53 -2.4
296,160 + HMPREF1058_RS07170 0.53 -5.3
296,161 - HMPREF1058_RS07170 0.53 -4.7
296,284 + HMPREF1058_RS07170 0.63 -3.8
296,316 + HMPREF1058_RS07170 0.66 -3.7
296,316 + HMPREF1058_RS07170 0.66 -2.5
296,317 - HMPREF1058_RS07170 0.66 -3.7
296,413 + HMPREF1058_RS07170 0.74 -3.5
296,474 + HMPREF1058_RS07170 0.79 -4.1
296,560 - HMPREF1058_RS07170 0.86 -6.7
296,570 + HMPREF1058_RS07170 0.87 -6.5
296,571 - HMPREF1058_RS07170 0.87 -1.0
296,667 + -2.1
296,668 - -3.0
296,668 - -0.7
296,668 - -2.7
296,668 - -3.7
296,712 + -4.9
296,819 + -1.4
296,820 - -3.3
296,821 + -4.1
296,822 - -4.8
296,823 + -2.0
296,824 - -2.8
296,824 - -5.8
296,825 + -2.3
296,825 + -3.5
296,825 + -4.6
296,825 + -2.0
296,825 + -1.8
296,826 - -2.4
296,826 - -5.2
296,826 - -2.8
296,861 - +0.1
296,880 + -2.3
296,884 + -3.8
296,884 + -4.5
296,884 + -2.3
296,915 - -0.6
296,931 - -0.0
297,027 + HMPREF1058_RS07165 0.21 +0.9
297,027 + HMPREF1058_RS07165 0.21 +1.2
297,065 + HMPREF1058_RS07165 0.35 -1.0
297,066 - HMPREF1058_RS07165 0.36 -0.6
297,124 + HMPREF1058_RS07165 0.58 -0.0
297,125 - HMPREF1058_RS07165 0.58 -1.7
297,125 - HMPREF1058_RS07165 0.58 +0.4
297,125 - HMPREF1058_RS07165 0.58 +2.4
297,174 + HMPREF1058_RS07165 0.77 -0.2
297,175 - HMPREF1058_RS07165 0.77 -0.1
297,239 + +0.1
297,307 - -0.0
297,327 - +0.1
297,352 + +0.3
297,353 - -0.4
297,454 + -0.3
297,509 + +1.0
297,510 - -0.2
297,528 + +0.1
297,529 - -0.4
297,544 - -0.1
297,550 + -0.5
297,560 + +0.0
297,561 - +1.2
297,566 + -1.3
297,639 + +1.0
297,681 - -0.2

Or see this region's nucleotide sequence