Strain Fitness in Rahnella sp. WP5 around EX31_RS25485

Experiment: L-Glutamine (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); RCH2 media; shaking
1,806	+		EX31_RS16875	0.49	-0.4
1,862	+		EX31_RS16875	0.52	+0.5
1,862	+		EX31_RS16875	0.52	+0.5
1,862	+		EX31_RS16875	0.52	+0.7
1,863	-		EX31_RS16875	0.52	-0.5
1,866	+		EX31_RS16875	0.52	-0.7
1,866	+		EX31_RS16875	0.52	+0.0
1,867	-		EX31_RS16875	0.52	+0.8
1,877	+		EX31_RS16875	0.53	+0.7
1,878	-		EX31_RS16875	0.53	-0.7
1,965	+		EX31_RS16875	0.58	+2.9
1,965	+		EX31_RS16875	0.58	-2.4
1,965	+		EX31_RS16875	0.58	+1.0
1,965	+		EX31_RS16875	0.58	-1.1
1,966	-		EX31_RS16875	0.58	-0.5
1,966	-		EX31_RS16875	0.58	+0.5
1,982	+		EX31_RS16875	0.59	+0.1
1,983	-		EX31_RS16875	0.59	-0.5
1,985	+		EX31_RS16875	0.59	-0.5
2,022	+		EX31_RS16875	0.61	-0.0
2,022	+		EX31_RS16875	0.61	+0.7
2,022	+		EX31_RS16875	0.61	+3.3
2,022	+		EX31_RS16875	0.61	+0.7
2,022	+		EX31_RS16875	0.61	+0.7
2,022	+		EX31_RS16875	0.61	+0.1
2,022	+		EX31_RS16875	0.61	-0.8
2,022	+		EX31_RS16875	0.61	+2.0
2,023	-		EX31_RS16875	0.61	-0.0
2,023	-		EX31_RS16875	0.61	+1.7
2,023	-		EX31_RS16875	0.61	-0.7
2,023	-		EX31_RS16875	0.61	-0.4
2,023	-		EX31_RS16875	0.61	+1.3
2,025	+		EX31_RS16875	0.61	+0.3
2,026	-		EX31_RS16875	0.61	+1.2
2,048	-		EX31_RS16875	0.62	+1.3
2,055	+		EX31_RS16875	0.63	+0.7
2,055	+		EX31_RS16875	0.63	-0.1
2,055	+		EX31_RS16875	0.63	-0.4
2,055	+		EX31_RS16875	0.63	-1.3
2,055	+		EX31_RS16875	0.63	+1.3
2,056	-		EX31_RS16875	0.63	+0.7
2,067	+		EX31_RS16875	0.63	+1.3
2,068	-		EX31_RS16875	0.64	-0.7
2,088	+		EX31_RS16875	0.65	+0.2
2,117	+		EX31_RS16875	0.66	-1.6
2,117	+		EX31_RS16875	0.66	+1.1
2,117	+		EX31_RS16875	0.66	+0.0
2,117	+		EX31_RS16875	0.66	+0.5
2,117	+		EX31_RS16875	0.66	-0.4
2,117	+		EX31_RS16875	0.66	-1.5
2,118	-		EX31_RS16875	0.66	+0.9
2,118	-		EX31_RS16875	0.66	-0.3
2,118	-		EX31_RS16875	0.66	+1.1
2,125	+		EX31_RS16875	0.67	+1.8
2,154	+		EX31_RS16875	0.68	-1.0
2,154	+		EX31_RS16875	0.68	-1.5
2,155	-		EX31_RS16875	0.68	+0.9
2,160	+		EX31_RS16875	0.69	-0.5
2,160	+		EX31_RS16875	0.69	+0.6
2,160	+		EX31_RS16875	0.69	-0.2
2,161	-		EX31_RS16875	0.69	+2.3
2,186	+		EX31_RS16875	0.70	-0.5
2,218	+		EX31_RS16875	0.72	-0.7
2,218	+		EX31_RS16875	0.72	+0.0
2,218	+		EX31_RS16875	0.72	-0.8
2,218	+		EX31_RS16875	0.72	-0.7
2,218	+		EX31_RS16875	0.72	+0.1
2,218	+		EX31_RS16875	0.72	+0.2
2,218	+		EX31_RS16875	0.72	-0.8
2,218	+		EX31_RS16875	0.72	-0.4
2,218	+		EX31_RS16875	0.72	+0.6
2,219	-		EX31_RS16875	0.72	-0.6
2,219	-		EX31_RS16875	0.72	+0.5
2,219	-		EX31_RS16875	0.72	+0.0
2,220	+		EX31_RS16875	0.72	-0.3
2,220	+		EX31_RS16875	0.72	+0.3
2,221	-		EX31_RS16875	0.72	+1.3
2,221	-		EX31_RS16875	0.72	+2.1
2,221	-		EX31_RS16875	0.72	+2.3
2,221	-		EX31_RS16875	0.72	+0.7
2,221	-		EX31_RS16875	0.72	+1.3
2,233	+		EX31_RS16875	0.73	+0.2
2,233	+		EX31_RS16875	0.73	+1.9
2,233	+		EX31_RS16875	0.73	+0.3
2,233	+		EX31_RS16875	0.73	+0.6
2,233	+		EX31_RS16875	0.73	-0.8
2,233	+		EX31_RS16875	0.73	-0.3
2,233	+		EX31_RS16875	0.73	+0.9
2,233	+		EX31_RS16875	0.73	-1.7
2,233	+		EX31_RS16875	0.73	+1.8
2,234	-		EX31_RS16875	0.73	+1.3
2,234	-		EX31_RS16875	0.73	+0.5
2,234	-		EX31_RS16875	0.73	+0.3
2,264	-		EX31_RS16875	0.74	+0.0
2,310	+		EX31_RS16875	0.77	+0.5
2,310	+		EX31_RS16875	0.77	-1.2
2,310	+		EX31_RS16875	0.77	+1.5
2,310	+		EX31_RS16875	0.77	-1.0
2,310	+		EX31_RS16875	0.77	+0.3
2,310	+		EX31_RS16875	0.77	+0.3
2,310	+		EX31_RS16875	0.77	+1.3
2,310	+		EX31_RS16875	0.77	+0.3
2,310	+		EX31_RS16875	0.77	+1.6
2,311	-		EX31_RS16875	0.77	+0.6
2,311	-		EX31_RS16875	0.77	+0.0
2,329	+		EX31_RS16875	0.78	+0.4
2,329	+		EX31_RS16875	0.78	+0.3
2,329	+		EX31_RS16875	0.78	+1.9
2,330	-		EX31_RS16875	0.78	-1.3
2,334	+		EX31_RS16875	0.78	+1.0
2,334	+		EX31_RS16875	0.78	-0.7
2,334	+		EX31_RS16875	0.78	-0.7
2,334	+		EX31_RS16875	0.78	-0.1
2,335	-		EX31_RS16875	0.78	+1.3
2,345	-		EX31_RS16875	0.79	-1.8
2,345	-		EX31_RS16875	0.79	-0.8
2,359	+		EX31_RS16875	0.80	-1.6
2,359	+		EX31_RS16875	0.80	+1.3
2,360	-		EX31_RS16875	0.80	-1.4
2,378	+		EX31_RS16875	0.81	-0.0
2,378	+		EX31_RS16875	0.81	+0.4
2,378	+		EX31_RS16875	0.81	+0.8
2,379	-		EX31_RS16875	0.81	-0.3
2,379	-		EX31_RS16875	0.81	-0.1
2,411	+		EX31_RS16875	0.83	-0.5
2,427	+		EX31_RS16875	0.84	-0.1
2,427	+		EX31_RS16875	0.84	+0.3
2,427	+		EX31_RS16875	0.84	-0.1
2,428	-		EX31_RS16875	0.84	+1.0
2,428	-		EX31_RS16875	0.84	+0.5
2,434	+		EX31_RS16875	0.84	-1.0
2,435	-		EX31_RS16875	0.84	-0.7
2,471	+		EX31_RS16875	0.86	-0.3
2,471	+		EX31_RS16875	0.86	+1.3
2,471	+		EX31_RS16875	0.86	+0.3
2,471	+		EX31_RS16875	0.86	+0.3
2,471	+		EX31_RS16875	0.86	+0.4
2,471	+		EX31_RS16875	0.86	+0.0
2,471	+		EX31_RS16875	0.86	-0.4
2,471	+		EX31_RS16875	0.86	+0.0
2,471	+		EX31_RS16875	0.86	+0.5
2,471	+		EX31_RS16875	0.86	+1.4
2,471	+		EX31_RS16875	0.86	+0.8
2,471	+		EX31_RS16875	0.86	-0.9
2,471	+		EX31_RS16875	0.86	+0.4
2,471	+		EX31_RS16875	0.86	-0.1
2,472	-		EX31_RS16875	0.86	+1.8
2,472	-		EX31_RS16875	0.86	+1.1
2,472	-		EX31_RS16875	0.86	+2.3
2,472	-		EX31_RS16875	0.86	+0.5
2,472	-		EX31_RS16875	0.86	+1.1
2,472	-		EX31_RS16875	0.86	-0.2
2,475	+		EX31_RS16875	0.86	+0.3
2,475	+		EX31_RS16875	0.86	+0.9
2,475	+		EX31_RS16875	0.86	+1.3
2,475	+		EX31_RS16875	0.86	+1.2
2,475	+		EX31_RS16875	0.86	+2.1
2,475	+		EX31_RS16875	0.86	-1.0
2,475	+		EX31_RS16875	0.86	+0.5
2,475	+		EX31_RS16875	0.86	+1.0
2,475	+		EX31_RS16875	0.86	+0.3
2,475	+		EX31_RS16875	0.86	-0.7
2,476	-		EX31_RS16875	0.86	-0.7
2,476	-		EX31_RS16875	0.86	+1.5
2,476	-		EX31_RS16875	0.86	+0.7
2,476	-		EX31_RS16875	0.86	+1.0
2,476	-		EX31_RS16875	0.86	+1.3
2,489	+		EX31_RS16875	0.87	+0.4
2,489	+		EX31_RS16875	0.87	+0.6
2,489	+		EX31_RS16875	0.87	-0.5
2,507	-		EX31_RS16875	0.88	-0.2
2,531	+		EX31_RS16875	0.89	-2.5
2,532	-		EX31_RS16875	0.89	-0.6
2,532	-		EX31_RS16875	0.89	-0.4
2,532	-		EX31_RS16875	0.89	+0.3
2,532	-		EX31_RS16875	0.89	+2.1
2,536	-		EX31_RS16875	0.90	-0.1
2,538	+		EX31_RS16875	0.90	-0.8
2,538	+		EX31_RS16875	0.90	-0.5
2,538	+		EX31_RS16875	0.90	-0.0
2,538	+		EX31_RS16875	0.90	+0.1
2,538	+		EX31_RS16875	0.90	+0.2
2,539	-		EX31_RS16875	0.90	+2.2
2,559	+				+1.0
2,559	+				+1.0
2,559	+				-0.1
2,580	+				-0.7
2,580	+				-0.3
2,581	-				+1.0
2,581	-				+2.1
2,599	-				+1.8
2,609	+				-0.4
2,609	+				-1.1
2,609	+				-0.2
2,609	+				+0.6
2,609	+				-0.4
2,609	+				+1.1
2,610	-				-1.0
2,610	-				+1.4
2,610	-				+0.7
2,610	-				-0.4
2,630	+				+0.7
2,631	-				+0.7
2,631	-				+2.1
2,650	-				+1.0
2,719	+				+1.3
2,719	+				+0.1
2,723	+				+2.1
2,723	+				+1.2
2,723	+				-0.6
2,723	+				-0.6
2,723	+				+0.8
2,723	+				-0.1
2,723	+				-0.4
2,724	-				+1.1
2,724	-				+1.0
2,724	-				+0.5
2,730	+				+0.6
2,730	+				+0.1
2,761	+				+2.3
2,773	-				+1.9
2,829	-		EX31_RS25485	0.14	+1.1
2,848	+		EX31_RS25485	0.21	+0.1
2,888	+		EX31_RS25485	0.36	+1.3
2,888	+		EX31_RS25485	0.36	-0.8
2,888	+		EX31_RS25485	0.36	-1.0
2,888	+		EX31_RS25485	0.36	+0.5
2,918	+		EX31_RS25485	0.48	+0.5
2,918	+		EX31_RS25485	0.48	+0.4
2,918	+		EX31_RS25485	0.48	+1.3
2,918	+		EX31_RS25485	0.48	+0.5
2,918	+		EX31_RS25485	0.48	+1.2
2,918	+		EX31_RS25485	0.48	+0.6
2,918	+		EX31_RS25485	0.48	+0.7
2,919	-		EX31_RS25485	0.48	-0.4
2,919	-		EX31_RS25485	0.48	-0.3
2,932	+		EX31_RS25485	0.53	-0.8
2,932	+		EX31_RS25485	0.53	-2.1
2,932	+		EX31_RS25485	0.53	+0.6
2,932	+		EX31_RS25485	0.53	+0.9
2,932	+		EX31_RS25485	0.53	-0.7
2,932	+		EX31_RS25485	0.53	+0.0
2,932	+		EX31_RS25485	0.53	+2.3
2,932	+		EX31_RS25485	0.53	+1.0
2,933	-		EX31_RS25485	0.53	+1.7
2,987	+		EX31_RS25485	0.74	+0.0
2,987	+		EX31_RS25485	0.74	+2.0
2,988	-		EX31_RS25485	0.74	-0.7
3,019	-		EX31_RS25485	0.86	+0.7
3,037	+				+0.3
3,037	+				+0.5
3,056	-				+0.2
3,076	+				+1.3
3,099	+				-0.0
3,101	+				+0.6
3,102	-				+0.7
3,169	+				-0.3
3,169	+				+1.1
3,169	+				+0.7
3,169	+				+1.5
3,169	+				-0.7
3,169	+				-1.1
3,169	+				-0.2
3,169	+				-0.1
3,169	+				-1.5
3,170	-				+1.1
3,170	-				-0.5
3,170	-				+2.8
3,170	-				+2.3
3,170	-				+0.6
3,170	-				+0.4
3,170	-				+0.7
3,189	+				+0.4
3,313	+				-0.9
3,339	+				+0.4
3,339	+				-1.8
3,339	+				+0.5
3,340	-				+1.3
3,364	+				-0.8
3,364	+				-1.8
3,365	-				+1.3
3,365	-				+0.6
3,365	-				-0.5
3,367	+				-0.7
3,367	+				+0.1
3,367	+				+0.6
3,367	+				+0.3
3,367	+				+0.2
3,367	+				-0.3
3,368	-				-0.5
3,368	-				+1.5
3,368	-				+1.2
3,477	+				+0.5
3,480	+				-0.5
3,481	-				+2.7
3,481	-				+1.5
3,482	+				-0.5
3,507	-				+1.6
3,513	-				+1.3
3,526	+				-0.3
3,534	+				+0.3
3,534	+				-0.3
3,534	+				+2.3
3,535	-				-0.3
3,537	+				-1.8
3,538	-				+0.7
3,538	-				+0.7
3,538	-				-0.3
3,538	-				-0.7
3,538	-				+0.0
3,538	-				-0.8
3,538	-				-0.8
3,538	-				-0.5
3,538	-				-1.1
3,538	-				+0.8
3,580	+				-0.5
3,580	+				-2.1
3,580	+				-1.4
3,580	+				+1.0
3,580	+				+1.3
3,580	+				+1.6
3,580	+				+1.3
3,580	+				+1.3
3,580	+				+0.7
3,581	-				+0.2
3,581	-				+0.0
3,581	-				-0.7
3,581	-				+0.7
3,582	+				+2.0
3,583	-				-0.1
3,583	-				-1.0
3,587	+				+0.7
3,587	+				+1.8
3,588	-				-1.7
3,588	-				+1.4
3,588	-				+1.0
3,588	-				+1.7
3,588	-				-0.6
3,588	-				-0.3
3,591	+				+0.2
3,592	-				+0.2
3,592	-				+0.6
3,592	-				-0.5
3,616	+				+0.9
3,670	-				+0.5
3,676	+				+1.1
3,677	-				-2.1
3,680	+				+2.3
3,745	+				-1.6
3,745	+				-0.2
3,745	+				+1.3
3,749	+				+1.4
3,749	+				+1.7
3,749	+				+0.9
3,749	+				-0.7
3,749	+				+0.9
3,749	+				+1.8
3,749	+				+1.0
3,749	+				+0.7
3,749	+				+0.7
3,750	-				+1.3
3,750	-				-1.4
3,750	-				+2.9
3,750	-				-0.8
3,750	-				+0.0
3,750	-				-1.3
3,750	-				+0.2
3,750	-				+0.5
3,750	-				-0.6
3,750	-				+1.3
3,750	-				+0.6
3,755	+				-0.4
3,756	-				+0.4
3,756	-				+0.3
3,756	-				-1.3
3,839	+				+0.4
3,890	+		EX31_RS16880	0.11	-0.3
3,890	+		EX31_RS16880	0.11	+0.0
3,890	+		EX31_RS16880	0.11	+1.2
3,890	+		EX31_RS16880	0.11	+1.4
3,890	+		EX31_RS16880	0.11	-0.8
3,890	+		EX31_RS16880	0.11	-0.7
3,890	+		EX31_RS16880	0.11	-1.2
3,891	-		EX31_RS16880	0.11	-0.7
3,891	-		EX31_RS16880	0.11	+1.3
3,891	-		EX31_RS16880	0.11	+1.3
3,891	-		EX31_RS16880	0.11	-1.1
3,891	-		EX31_RS16880	0.11	+1.0
3,891	-		EX31_RS16880	0.11	-0.1
3,930	-		EX31_RS16880	0.15	-0.7
3,930	-		EX31_RS16880	0.15	-0.4