Strain Fitness in Rahnella sp. WP5 around EX31_RS24090

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24080 and EX31_RS24085 are separated by 26 nucleotidesEX31_RS24085 and EX31_RS24090 overlap by 1 nucleotidesEX31_RS24090 and EX31_RS24095 are separated by 411 nucleotides EX31_RS24080: EX31_RS24080 - pyrimidine utilization protein C, at 584,991 to 585,377 _RS24080 EX31_RS24085: EX31_RS24085 - pyrimidine utilization protein B, at 585,404 to 586,153 _RS24085 EX31_RS24090: EX31_RS24090 - pyrimidine utilization protein A, at 586,153 to 587,244 _RS24090 EX31_RS24095: EX31_RS24095 - HTH-type transcriptional regulator RutR, at 587,656 to 588,345 _RS24095 Position (kb) 586 587 588Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 585.213 kb on + strand, within EX31_RS24080at 585.214 kb on - strand, within EX31_RS24080at 585.214 kb on - strand, within EX31_RS24080at 585.292 kb on + strand, within EX31_RS24080at 585.292 kb on + strand, within EX31_RS24080at 585.292 kb on + strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.293 kb on - strand, within EX31_RS24080at 585.360 kb on - strandat 585.360 kb on - strandat 585.360 kb on - strandat 585.372 kb on - strandat 585.381 kb on + strandat 585.381 kb on + strandat 585.381 kb on + strandat 585.381 kb on + strandat 585.381 kb on + strandat 585.381 kb on + strandat 585.382 kb on - strandat 585.382 kb on - strandat 585.382 kb on - strandat 585.382 kb on - strandat 585.382 kb on - strandat 585.382 kb on - strandat 585.456 kb on - strandat 585.490 kb on + strand, within EX31_RS24085at 585.493 kb on - strand, within EX31_RS24085at 585.493 kb on - strand, within EX31_RS24085at 585.493 kb on - strand, within EX31_RS24085at 585.493 kb on - strand, within EX31_RS24085at 585.562 kb on - strand, within EX31_RS24085at 585.590 kb on - strand, within EX31_RS24085at 585.645 kb on + strand, within EX31_RS24085at 585.646 kb on - strand, within EX31_RS24085at 585.646 kb on - strand, within EX31_RS24085at 585.646 kb on - strand, within EX31_RS24085at 585.673 kb on + strand, within EX31_RS24085at 585.691 kb on - strand, within EX31_RS24085at 585.864 kb on + strand, within EX31_RS24085at 585.864 kb on + strand, within EX31_RS24085at 585.864 kb on + strand, within EX31_RS24085at 585.994 kb on - strand, within EX31_RS24085at 586.012 kb on - strand, within EX31_RS24085at 586.212 kb on + strandat 586.212 kb on + strandat 586.214 kb on + strandat 586.215 kb on - strandat 586.215 kb on - strandat 586.215 kb on - strandat 586.265 kb on - strand, within EX31_RS24090at 586.323 kb on - strand, within EX31_RS24090at 586.393 kb on - strand, within EX31_RS24090at 586.468 kb on - strand, within EX31_RS24090at 586.469 kb on + strand, within EX31_RS24090at 586.521 kb on + strand, within EX31_RS24090at 586.532 kb on + strand, within EX31_RS24090at 586.532 kb on + strand, within EX31_RS24090at 586.532 kb on + strand, within EX31_RS24090at 586.533 kb on - strand, within EX31_RS24090at 586.533 kb on - strand, within EX31_RS24090at 586.533 kb on - strand, within EX31_RS24090at 586.533 kb on - strand, within EX31_RS24090at 586.805 kb on + strand, within EX31_RS24090at 586.806 kb on - strand, within EX31_RS24090at 586.817 kb on + strand, within EX31_RS24090at 586.818 kb on - strand, within EX31_RS24090at 586.823 kb on + strand, within EX31_RS24090at 586.838 kb on + strand, within EX31_RS24090at 586.839 kb on - strand, within EX31_RS24090at 586.839 kb on - strand, within EX31_RS24090at 586.872 kb on - strand, within EX31_RS24090at 586.994 kb on + strand, within EX31_RS24090at 586.994 kb on + strand, within EX31_RS24090at 586.995 kb on - strand, within EX31_RS24090at 587.052 kb on + strand, within EX31_RS24090at 587.053 kb on - strand, within EX31_RS24090at 587.053 kb on - strand, within EX31_RS24090at 587.053 kb on - strand, within EX31_RS24090at 587.126 kb on + strand, within EX31_RS24090at 587.127 kb on - strand, within EX31_RS24090at 587.127 kb on - strand, within EX31_RS24090at 587.127 kb on - strand, within EX31_RS24090at 587.201 kb on - strandat 587.230 kb on + strandat 587.230 kb on + strandat 587.231 kb on - strandat 587.244 kb on + strandat 587.245 kb on - strandat 587.265 kb on - strandat 587.487 kb on + strandat 587.487 kb on + strandat 587.487 kb on + strandat 587.488 kb on - strandat 587.488 kb on - strandat 587.553 kb on + strandat 587.569 kb on - strandat 587.605 kb on + strandat 587.605 kb on + strandat 587.605 kb on + strandat 587.606 kb on - strandat 587.606 kb on - strandat 587.769 kb on + strand, within EX31_RS24095at 587.769 kb on + strand, within EX31_RS24095at 587.769 kb on + strand, within EX31_RS24095at 587.770 kb on - strand, within EX31_RS24095at 587.770 kb on - strand, within EX31_RS24095at 587.804 kb on - strand, within EX31_RS24095at 587.872 kb on + strand, within EX31_RS24095at 587.872 kb on + strand, within EX31_RS24095at 587.872 kb on + strand, within EX31_RS24095at 587.872 kb on + strand, within EX31_RS24095at 587.873 kb on - strand, within EX31_RS24095at 587.875 kb on + strand, within EX31_RS24095at 587.875 kb on + strand, within EX31_RS24095at 587.875 kb on + strand, within EX31_RS24095at 587.875 kb on + strand, within EX31_RS24095at 587.875 kb on + strand, within EX31_RS24095at 587.876 kb on - strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.899 kb on + strand, within EX31_RS24095at 587.900 kb on - strand, within EX31_RS24095at 587.900 kb on - strand, within EX31_RS24095at 587.901 kb on + strand, within EX31_RS24095at 587.901 kb on + strand, within EX31_RS24095at 587.901 kb on + strand, within EX31_RS24095at 587.992 kb on + strand, within EX31_RS24095at 587.992 kb on + strand, within EX31_RS24095at 587.992 kb on + strand, within EX31_RS24095at 587.993 kb on - strand, within EX31_RS24095at 587.993 kb on - strand, within EX31_RS24095at 587.993 kb on - strand, within EX31_RS24095at 587.993 kb on - strand, within EX31_RS24095at 587.994 kb on + strand, within EX31_RS24095at 587.995 kb on - strand, within EX31_RS24095at 587.995 kb on - strand, within EX31_RS24095at 588.123 kb on + strand, within EX31_RS24095at 588.191 kb on + strand, within EX31_RS24095at 588.191 kb on + strand, within EX31_RS24095at 588.191 kb on + strand, within EX31_RS24095at 588.191 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.195 kb on + strand, within EX31_RS24095at 588.196 kb on - strand, within EX31_RS24095at 588.196 kb on - strand, within EX31_RS24095at 588.220 kb on + strand, within EX31_RS24095

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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585,213 + EX31_RS24080 0.57 -0.9
585,214 - EX31_RS24080 0.58 +1.0
585,214 - EX31_RS24080 0.58 -0.4
585,292 + EX31_RS24080 0.78 -0.8
585,292 + EX31_RS24080 0.78 +0.5
585,292 + EX31_RS24080 0.78 +0.4
585,293 - EX31_RS24080 0.78 -0.8
585,293 - EX31_RS24080 0.78 +0.1
585,293 - EX31_RS24080 0.78 +1.7
585,293 - EX31_RS24080 0.78 +0.3
585,293 - EX31_RS24080 0.78 -0.1
585,293 - EX31_RS24080 0.78 +0.1
585,293 - EX31_RS24080 0.78 -0.6
585,293 - EX31_RS24080 0.78 -1.6
585,360 - -1.7
585,360 - -1.1
585,360 - -0.3
585,372 - -0.1
585,381 + +0.4
585,381 + -1.0
585,381 + -1.2
585,381 + +0.3
585,381 + +1.1
585,381 + -0.0
585,382 - +0.9
585,382 - -1.9
585,382 - +0.1
585,382 - -0.1
585,382 - -0.1
585,382 - +0.4
585,456 - +0.0
585,490 + EX31_RS24085 0.11 -0.9
585,493 - EX31_RS24085 0.12 +0.0
585,493 - EX31_RS24085 0.12 -1.1
585,493 - EX31_RS24085 0.12 -0.3
585,493 - EX31_RS24085 0.12 -1.1
585,562 - EX31_RS24085 0.21 +0.7
585,590 - EX31_RS24085 0.25 +0.3
585,645 + EX31_RS24085 0.32 -0.7
585,646 - EX31_RS24085 0.32 -0.3
585,646 - EX31_RS24085 0.32 -0.1
585,646 - EX31_RS24085 0.32 -0.6
585,673 + EX31_RS24085 0.36 -0.4
585,691 - EX31_RS24085 0.38 -0.9
585,864 + EX31_RS24085 0.61 -0.7
585,864 + EX31_RS24085 0.61 +0.1
585,864 + EX31_RS24085 0.61 +0.3
585,994 - EX31_RS24085 0.79 +1.2
586,012 - EX31_RS24085 0.81 +1.4
586,212 + +0.7
586,212 + +0.6
586,214 + +0.3
586,215 - -0.3
586,215 - -0.9
586,215 - +0.0
586,265 - EX31_RS24090 0.10 -0.5
586,323 - EX31_RS24090 0.16 +0.3
586,393 - EX31_RS24090 0.22 -1.5
586,468 - EX31_RS24090 0.29 +0.3
586,469 + EX31_RS24090 0.29 -0.9
586,521 + EX31_RS24090 0.34 -1.6
586,532 + EX31_RS24090 0.35 +0.7
586,532 + EX31_RS24090 0.35 +0.5
586,532 + EX31_RS24090 0.35 +0.4
586,533 - EX31_RS24090 0.35 +0.6
586,533 - EX31_RS24090 0.35 +0.5
586,533 - EX31_RS24090 0.35 -0.0
586,533 - EX31_RS24090 0.35 -0.7
586,805 + EX31_RS24090 0.60 +0.1
586,806 - EX31_RS24090 0.60 +0.6
586,817 + EX31_RS24090 0.61 -0.6
586,818 - EX31_RS24090 0.61 -1.7
586,823 + EX31_RS24090 0.61 -0.2
586,838 + EX31_RS24090 0.63 +1.5
586,839 - EX31_RS24090 0.63 -1.1
586,839 - EX31_RS24090 0.63 -1.5
586,872 - EX31_RS24090 0.66 -0.2
586,994 + EX31_RS24090 0.77 -1.4
586,994 + EX31_RS24090 0.77 -1.2
586,995 - EX31_RS24090 0.77 +0.7
587,052 + EX31_RS24090 0.82 +3.3
587,053 - EX31_RS24090 0.82 -0.1
587,053 - EX31_RS24090 0.82 +0.7
587,053 - EX31_RS24090 0.82 -0.6
587,126 + EX31_RS24090 0.89 +0.0
587,127 - EX31_RS24090 0.89 -0.3
587,127 - EX31_RS24090 0.89 -0.6
587,127 - EX31_RS24090 0.89 -0.9
587,201 - -1.1
587,230 + -0.3
587,230 + +1.3
587,231 - +0.7
587,244 + -1.4
587,245 - +0.1
587,265 - +0.1
587,487 + +0.6
587,487 + +0.3
587,487 + +1.0
587,488 - +0.9
587,488 - -1.7
587,553 + -0.2
587,569 - +0.4
587,605 + -0.4
587,605 + +1.0
587,605 + +0.9
587,606 - +2.2
587,606 - -1.6
587,769 + EX31_RS24095 0.16 +0.9
587,769 + EX31_RS24095 0.16 +1.4
587,769 + EX31_RS24095 0.16 -2.9
587,770 - EX31_RS24095 0.17 +0.6
587,770 - EX31_RS24095 0.17 +0.3
587,804 - EX31_RS24095 0.21 -0.3
587,872 + EX31_RS24095 0.31 -0.3
587,872 + EX31_RS24095 0.31 -0.5
587,872 + EX31_RS24095 0.31 +0.1
587,872 + EX31_RS24095 0.31 +0.9
587,873 - EX31_RS24095 0.31 +0.4
587,875 + EX31_RS24095 0.32 -1.0
587,875 + EX31_RS24095 0.32 +0.2
587,875 + EX31_RS24095 0.32 +0.1
587,875 + EX31_RS24095 0.32 +0.7
587,875 + EX31_RS24095 0.32 +1.0
587,876 - EX31_RS24095 0.32 -1.2
587,899 + EX31_RS24095 0.35 -0.9
587,899 + EX31_RS24095 0.35 -1.4
587,899 + EX31_RS24095 0.35 +0.4
587,899 + EX31_RS24095 0.35 -0.4
587,899 + EX31_RS24095 0.35 +0.7
587,899 + EX31_RS24095 0.35 -2.0
587,899 + EX31_RS24095 0.35 -1.1
587,900 - EX31_RS24095 0.35 -0.3
587,900 - EX31_RS24095 0.35 +0.0
587,901 + EX31_RS24095 0.36 +0.7
587,901 + EX31_RS24095 0.36 -0.4
587,901 + EX31_RS24095 0.36 -1.3
587,992 + EX31_RS24095 0.49 -0.4
587,992 + EX31_RS24095 0.49 +1.6
587,992 + EX31_RS24095 0.49 +0.7
587,993 - EX31_RS24095 0.49 +0.3
587,993 - EX31_RS24095 0.49 +0.7
587,993 - EX31_RS24095 0.49 -0.3
587,993 - EX31_RS24095 0.49 +1.3
587,994 + EX31_RS24095 0.49 -1.5
587,995 - EX31_RS24095 0.49 +0.8
587,995 - EX31_RS24095 0.49 -0.1
588,123 + EX31_RS24095 0.68 -0.1
588,191 + EX31_RS24095 0.78 -1.2
588,191 + EX31_RS24095 0.78 -0.9
588,191 + EX31_RS24095 0.78 -0.3
588,191 + EX31_RS24095 0.78 +1.7
588,195 + EX31_RS24095 0.78 +0.3
588,195 + EX31_RS24095 0.78 -1.3
588,195 + EX31_RS24095 0.78 +0.6
588,195 + EX31_RS24095 0.78 -0.2
588,195 + EX31_RS24095 0.78 +0.2
588,195 + EX31_RS24095 0.78 +3.7
588,195 + EX31_RS24095 0.78 +1.0
588,195 + EX31_RS24095 0.78 -3.7
588,195 + EX31_RS24095 0.78 -1.3
588,195 + EX31_RS24095 0.78 +0.4
588,196 - EX31_RS24095 0.78 -1.1
588,196 - EX31_RS24095 0.78 -0.6
588,220 + EX31_RS24095 0.82 +0.1

Or see this region's nucleotide sequence