Strain Fitness in Rahnella sp. WP5 around EX31_RS17055

Experiment: L-Glutamine (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Glutamine (N); RCH2 media; shaking
849	-		EX31_RS26065	0.44	-0.3
849	-		EX31_RS26065	0.44	+1.8
897	+		EX31_RS26065	0.89	+0.7
897	+		EX31_RS26065	0.89	+2.2
897	+		EX31_RS26065	0.89	+0.9
898	-				+0.4
898	-				-0.1
898	-				+0.2
898	-				-0.1
908	+				-1.1
909	-				-0.0
909	-				+1.2
909	-				+1.1
909	-				+1.8
959	+				+0.8
959	+				+0.1
984	+				-0.1
984	+				+1.6
984	+				+2.0
984	+				+1.2
985	-				+0.7
985	-				-0.9
985	-				-0.9
989	+				-0.1
989	+				+0.1
992	+				+0.1
992	+				+0.7
993	-				+0.0
993	-				-0.2
993	-				+1.1
1,005	+				-0.9
1,006	-				+0.7
1,006	-				-0.0
1,006	-				-0.8
1,009	+				-0.3
1,010	-				-0.1
1,018	+				-0.8
1,018	+				-0.8
1,018	+				-0.9
1,018	+				-1.2
1,019	-				-0.3
1,019	-				-0.6
1,019	-				-1.0
1,027	-				+1.0
1,047	+				+2.2
1,070	+		EX31_RS17045	0.17	+0.7
1,097	+		EX31_RS17045	0.25	+0.2
1,098	-		EX31_RS17045	0.26	+0.9
1,104	+		EX31_RS17045	0.28	-0.9
1,104	+		EX31_RS17045	0.28	-0.9
1,104	+		EX31_RS17045	0.28	+0.9
1,104	+		EX31_RS17045	0.28	+1.7
1,105	-		EX31_RS17045	0.28	-1.2
1,105	-		EX31_RS17045	0.28	-0.1
1,105	-		EX31_RS17045	0.28	+0.8
1,105	-		EX31_RS17045	0.28	+1.2
1,234	+		EX31_RS17045	0.69	-0.7
1,234	+		EX31_RS17045	0.69	+0.2
1,234	+		EX31_RS17045	0.69	-0.5
1,234	+		EX31_RS17045	0.69	-0.8
1,234	+		EX31_RS17045	0.69	-0.3
1,234	+		EX31_RS17045	0.69	-2.8
1,235	-		EX31_RS17045	0.69	+0.0
1,235	-		EX31_RS17045	0.69	-0.6
1,235	-		EX31_RS17045	0.69	-2.0
1,235	-		EX31_RS17045	0.69	+0.9
1,235	-		EX31_RS17045	0.69	-1.3
1,235	-		EX31_RS17045	0.69	+0.4
1,235	-		EX31_RS17045	0.69	+0.7
1,235	-		EX31_RS17045	0.69	-2.1
1,235	-		EX31_RS17045	0.69	-0.6
1,235	-		EX31_RS17045	0.69	-2.3
1,235	-		EX31_RS17045	0.69	-0.6
1,266	-		EX31_RS17045	0.79	+1.9
1,317	+				+1.4
1,318	-				+1.2
1,333	-				+2.2
1,333	-				-1.9
1,333	-				+0.2
1,333	-				-0.1
1,358	+				+1.4
1,358	+				+0.0
1,359	-				-0.0
1,359	-				+1.9
1,359	-				+0.8
1,359	-				-1.6
1,359	-				+0.5
1,367	+				+2.5
1,445	-		EX31_RS17050	0.24	-1.1
1,445	-		EX31_RS17050	0.24	+0.7
1,445	-		EX31_RS17050	0.24	+0.4
1,445	-		EX31_RS17050	0.24	+0.2
1,458	+		EX31_RS17050	0.27	+1.9
1,459	-		EX31_RS17050	0.27	-0.7
1,555	+		EX31_RS17050	0.47	-0.8
1,556	-		EX31_RS17050	0.47	+0.2
1,556	-		EX31_RS17050	0.47	-1.0
1,556	-		EX31_RS17050	0.47	+0.0
1,556	-		EX31_RS17050	0.47	-0.2
1,556	-		EX31_RS17050	0.47	-0.6
1,556	-		EX31_RS17050	0.47	+0.7
1,556	-		EX31_RS17050	0.47	-1.8
1,559	+		EX31_RS17050	0.48	+0.2
1,560	-		EX31_RS17050	0.48	+0.2
1,579	+		EX31_RS17050	0.52	-1.2
1,580	-		EX31_RS17050	0.53	+0.8
1,588	-		EX31_RS17050	0.54	+1.1
1,595	-		EX31_RS17050	0.56	+1.1
1,595	-		EX31_RS17050	0.56	-1.6
1,644	-		EX31_RS17050	0.66	+0.6
1,709	+		EX31_RS17050	0.80	+0.0
1,709	+		EX31_RS17050	0.80	+0.2
1,710	-		EX31_RS17050	0.80	+0.2
1,710	-		EX31_RS17050	0.80	+0.1
1,710	-		EX31_RS17050	0.80	-1.9
1,816	+				-0.5
1,816	+				+0.9
1,816	+				+0.3
1,817	-				+0.7
1,817	-				+0.2
1,817	-				+0.1
1,817	-				-0.5
1,817	-				-0.6
1,817	-				+0.4
1,817	-				+0.6
1,817	-				-0.6
1,817	-				-1.5
1,823	+				+0.6
1,824	-				+1.2
1,857	-				-0.2
1,857	-				-1.1
1,857	-				-0.1
1,866	+				+1.4
1,866	+				-1.5
1,866	+				-0.3
1,867	-				-0.7
1,867	-				+0.2
1,907	+		EX31_RS17055	0.13	+3.0
1,907	+		EX31_RS17055	0.13	-1.8
1,907	+		EX31_RS17055	0.13	+0.1
1,907	+		EX31_RS17055	0.13	+1.8
1,907	+		EX31_RS17055	0.13	+2.2
1,908	-		EX31_RS17055	0.13	+0.7
1,908	-		EX31_RS17055	0.13	-0.2
1,908	-		EX31_RS17055	0.13	-1.7
1,925	+		EX31_RS17055	0.15	+0.2
1,925	+		EX31_RS17055	0.15	-0.3
1,925	+		EX31_RS17055	0.15	+1.4
1,925	+		EX31_RS17055	0.15	+1.2
1,925	+		EX31_RS17055	0.15	-0.2
1,926	-		EX31_RS17055	0.15	+0.4
1,926	-		EX31_RS17055	0.15	+0.8
1,926	-		EX31_RS17055	0.15	+0.8
1,928	+		EX31_RS17055	0.16	-0.3
1,928	+		EX31_RS17055	0.16	-0.8
1,928	+		EX31_RS17055	0.16	-0.3
1,928	+		EX31_RS17055	0.16	+0.6
1,928	+		EX31_RS17055	0.16	+1.1
1,929	-		EX31_RS17055	0.16	+0.8
1,929	-		EX31_RS17055	0.16	-0.0
1,929	-		EX31_RS17055	0.16	+0.8
1,929	-		EX31_RS17055	0.16	-0.2
1,929	-		EX31_RS17055	0.16	+0.2
2,019	-		EX31_RS17055	0.28	-0.3
2,051	+		EX31_RS17055	0.33	+1.8
2,051	+		EX31_RS17055	0.33	+0.5
2,051	+		EX31_RS17055	0.33	-0.4
2,051	+		EX31_RS17055	0.33	+0.9
2,051	+		EX31_RS17055	0.33	+1.2
2,051	+		EX31_RS17055	0.33	+0.3
2,051	+		EX31_RS17055	0.33	+1.2
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	-0.2
2,051	+		EX31_RS17055	0.33	+0.1
2,051	+		EX31_RS17055	0.33	+1.1
2,051	+		EX31_RS17055	0.33	+0.7
2,051	+		EX31_RS17055	0.33	+0.4
2,051	+		EX31_RS17055	0.33	-1.5
2,051	+		EX31_RS17055	0.33	-1.1
2,052	-		EX31_RS17055	0.33	-0.5
2,052	-		EX31_RS17055	0.33	-0.4
2,052	-		EX31_RS17055	0.33	-0.1
2,052	-		EX31_RS17055	0.33	+2.8
2,052	-		EX31_RS17055	0.33	-1.9
2,052	-		EX31_RS17055	0.33	+0.5
2,052	-		EX31_RS17055	0.33	-0.1
2,052	-		EX31_RS17055	0.33	+0.2
2,052	-		EX31_RS17055	0.33	-1.5
2,052	-		EX31_RS17055	0.33	+0.2
2,055	+		EX31_RS17055	0.33	+0.4
2,055	+		EX31_RS17055	0.33	+0.1
2,055	+		EX31_RS17055	0.33	-0.3
2,055	+		EX31_RS17055	0.33	-0.1
2,056	-		EX31_RS17055	0.33	+1.5
2,056	-		EX31_RS17055	0.33	+0.7
2,056	-		EX31_RS17055	0.33	+1.2
2,056	-		EX31_RS17055	0.33	-0.6
2,056	-		EX31_RS17055	0.33	+0.9
2,056	-		EX31_RS17055	0.33	-0.1
2,168	-		EX31_RS17055	0.49	+0.7
2,168	-		EX31_RS17055	0.49	+2.7
2,168	-		EX31_RS17055	0.49	-0.1
2,168	-		EX31_RS17055	0.49	+0.7
2,186	+		EX31_RS17055	0.52	+0.5
2,187	-		EX31_RS17055	0.52	+0.1
2,187	-		EX31_RS17055	0.52	+0.6
2,187	-		EX31_RS17055	0.52	+1.2
2,246	+		EX31_RS17055	0.60	+1.4
2,246	+		EX31_RS17055	0.60	+0.8
2,310	+		EX31_RS17055	0.69	+0.7
2,310	+		EX31_RS17055	0.69	+1.4
2,310	+		EX31_RS17055	0.69	+1.0
2,311	-		EX31_RS17055	0.69	-0.2
2,311	-		EX31_RS17055	0.69	+0.0
2,311	-		EX31_RS17055	0.69	+1.2
2,311	-		EX31_RS17055	0.69	+0.6
2,311	-		EX31_RS17055	0.69	-2.3
2,311	-		EX31_RS17055	0.69	+0.5
2,348	+		EX31_RS17055	0.74	+1.2
2,348	+		EX31_RS17055	0.74	+0.6
2,388	-		EX31_RS17055	0.80	+0.8
2,411	+		EX31_RS17055	0.83	-0.2
2,411	+		EX31_RS17055	0.83	+0.4
2,420	+		EX31_RS17055	0.84	-0.6
2,420	+		EX31_RS17055	0.84	+0.3
2,420	+		EX31_RS17055	0.84	+0.3
2,421	-		EX31_RS17055	0.84	-1.0
2,421	-		EX31_RS17055	0.84	+0.7
2,421	-		EX31_RS17055	0.84	-0.5
2,421	-		EX31_RS17055	0.84	-0.6
2,421	-		EX31_RS17055	0.84	-0.7
2,421	-		EX31_RS17055	0.84	+0.2
2,421	-		EX31_RS17055	0.84	+2.0
2,421	-		EX31_RS17055	0.84	-0.9
2,537	+				+0.1
2,537	+				-0.2
2,548	+				+2.0
2,548	+				-0.7
2,548	+				+0.9
2,549	-				-2.2
2,549	-				-0.6
2,572	+				+1.2
2,572	+				+0.7
2,572	+				+0.2
2,572	+				-0.9
2,573	-				-0.8
2,573	-				+1.9
2,573	-				-0.5
2,573	-				+1.8
2,573	-				-0.6
2,573	-				-0.1
2,573	-				-1.5
2,580	-				+1.6
2,683	-		EX31_RS17060	0.13	+0.8
2,779	-		EX31_RS17060	0.22	-0.3
2,779	-		EX31_RS17060	0.22	-0.0
2,987	+		EX31_RS17060	0.41	-0.2
2,999	-		EX31_RS17060	0.42	-0.5
2,999	-		EX31_RS17060	0.42	-1.9
3,047	-		EX31_RS17060	0.46	-0.1
3,057	+		EX31_RS17060	0.47	-0.5
3,192	+		EX31_RS17060	0.59	+0.8
3,192	+		EX31_RS17060	0.59	-0.2
3,192	+		EX31_RS17060	0.59	-0.8
3,192	+		EX31_RS17060	0.59	+0.9
3,192	+		EX31_RS17060	0.59	+0.8
3,192	+		EX31_RS17060	0.59	+0.6
3,192	+		EX31_RS17060	0.59	-0.3
3,193	-		EX31_RS17060	0.59	-1.5
3,193	-		EX31_RS17060	0.59	+1.7
3,193	-		EX31_RS17060	0.59	+1.2
3,193	-		EX31_RS17060	0.59	-1.6
3,193	-		EX31_RS17060	0.59	-0.2
3,193	-		EX31_RS17060	0.59	-1.8
3,193	-		EX31_RS17060	0.59	+0.8
3,193	-		EX31_RS17060	0.59	-1.1
3,193	-		EX31_RS17060	0.59	-1.4
3,196	-		EX31_RS17060	0.59	+0.5
3,196	-		EX31_RS17060	0.59	-0.1
3,196	-		EX31_RS17060	0.59	+0.2
3,196	-		EX31_RS17060	0.59	+0.9
3,218	-		EX31_RS17060	0.61	+0.8
3,218	-		EX31_RS17060	0.61	+0.2
3,299	+		EX31_RS17060	0.69	+1.4
3,300	-		EX31_RS17060	0.69	+0.8
3,300	-		EX31_RS17060	0.69	-0.2
3,316	+		EX31_RS17060	0.70	-0.1
3,316	+		EX31_RS17060	0.70	+0.2
3,316	+		EX31_RS17060	0.70	+1.9
3,316	+		EX31_RS17060	0.70	-0.0
3,316	+		EX31_RS17060	0.70	-0.2
3,377	+		EX31_RS17060	0.76	+1.1
3,378	-		EX31_RS17060	0.76	+0.6
3,378	-		EX31_RS17060	0.76	+0.6
3,378	-		EX31_RS17060	0.76	-0.2
3,378	-		EX31_RS17060	0.76	+0.7
3,384	-		EX31_RS17060	0.76	+0.4
3,384	-		EX31_RS17060	0.76	-0.6
3,384	-		EX31_RS17060	0.76	-0.3
3,384	-		EX31_RS17060	0.76	-0.4
3,384	-		EX31_RS17060	0.76	-0.1
3,384	-		EX31_RS17060	0.76	-2.4
3,403	+		EX31_RS17060	0.78	+0.5
3,456	+		EX31_RS17060	0.83	-0.1
3,457	-		EX31_RS17060	0.83	+0.1
3,457	-		EX31_RS17060	0.83	-0.6
3,457	-		EX31_RS17060	0.83	-0.3
3,478	-		EX31_RS17060	0.85	-0.1
3,478	-		EX31_RS17060	0.85	+0.4
3,478	-		EX31_RS17060	0.85	+0.1
3,479	+		EX31_RS17060	0.85	-0.9
3,479	+		EX31_RS17060	0.85	-1.8
3,479	+		EX31_RS17060	0.85	+1.8
3,479	+		EX31_RS17060	0.85	+0.1
3,479	+		EX31_RS17060	0.85	+0.5
3,480	-		EX31_RS17060	0.85	+1.1
3,480	-		EX31_RS17060	0.85	-2.8
3,480	-		EX31_RS17060	0.85	-0.3
3,480	-		EX31_RS17060	0.85	+1.8
3,480	-		EX31_RS17060	0.85	-0.3
3,480	-		EX31_RS17060	0.85	+0.7