Strain Fitness in Rahnella sp. WP5 around EX31_RS08755

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS08745 and EX31_RS08750 are separated by 39 nucleotidesEX31_RS08750 and EX31_RS25265 are separated by 4 nucleotidesEX31_RS25265 and EX31_RS08755 are separated by 5 nucleotidesEX31_RS08755 and EX31_RS08760 are separated by 150 nucleotides EX31_RS08745: EX31_RS08745 - 50S ribosomal protein L9, at 258,899 to 259,351 _RS08745 EX31_RS08750: EX31_RS08750 - 30S ribosomal protein S18, at 259,391 to 259,618 _RS08750 EX31_RS25265: EX31_RS25265 - primosomal replication protein N, at 259,623 to 259,940 _RS25265 EX31_RS08755: EX31_RS08755 - 30S ribosomal protein S6, at 259,946 to 260,338 _RS08755 EX31_RS08760: EX31_RS08760 - esterase, at 260,489 to 261,238 _RS08760 Position (kb) 259 260 261Strain fitness (log2 ratio) -2 -1 0 1at 259.019 kb on - strand, within EX31_RS08745at 259.019 kb on - strand, within EX31_RS08745at 259.073 kb on - strand, within EX31_RS08745at 259.119 kb on - strand, within EX31_RS08745at 259.378 kb on - strandat 259.378 kb on - strandat 260.481 kb on + strandat 260.490 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.545 kb on + strandat 260.546 kb on - strandat 260.546 kb on - strandat 260.546 kb on - strandat 260.569 kb on + strand, within EX31_RS08760at 260.570 kb on - strand, within EX31_RS08760at 260.581 kb on + strand, within EX31_RS08760at 260.681 kb on - strand, within EX31_RS08760at 260.681 kb on - strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.747 kb on + strand, within EX31_RS08760at 260.748 kb on - strand, within EX31_RS08760at 260.748 kb on - strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.778 kb on + strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.779 kb on - strand, within EX31_RS08760at 260.801 kb on + strand, within EX31_RS08760at 260.802 kb on - strand, within EX31_RS08760at 260.802 kb on - strand, within EX31_RS08760at 260.846 kb on - strand, within EX31_RS08760at 260.913 kb on - strand, within EX31_RS08760at 261.050 kb on + strand, within EX31_RS08760at 261.051 kb on - strand, within EX31_RS08760at 261.065 kb on + strand, within EX31_RS08760at 261.097 kb on - strand, within EX31_RS08760at 261.105 kb on + strand, within EX31_RS08760at 261.105 kb on + strand, within EX31_RS08760at 261.105 kb on + strand, within EX31_RS08760at 261.106 kb on - strand, within EX31_RS08760at 261.111 kb on + strand, within EX31_RS08760at 261.111 kb on + strand, within EX31_RS08760at 261.112 kb on - strand, within EX31_RS08760at 261.112 kb on - strand, within EX31_RS08760at 261.112 kb on - strand, within EX31_RS08760at 261.112 kb on - strand, within EX31_RS08760at 261.171 kb on + strandat 261.215 kb on - strandat 261.215 kb on - strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.225 kb on + strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.226 kb on - strandat 261.295 kb on + strandat 261.295 kb on + strandat 261.296 kb on - strandat 261.332 kb on - strandat 261.332 kb on - strandat 261.338 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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259,019 - EX31_RS08745 0.26 -1.6
259,019 - EX31_RS08745 0.26 -1.1
259,073 - EX31_RS08745 0.38 -0.9
259,119 - EX31_RS08745 0.49 -2.2
259,378 - -0.3
259,378 - -1.3
260,481 + -0.8
260,490 + -1.5
260,545 + -0.7
260,545 + -0.2
260,545 + -0.4
260,545 + -1.9
260,546 - -0.4
260,546 - +1.4
260,546 - -1.3
260,569 + EX31_RS08760 0.11 -0.4
260,570 - EX31_RS08760 0.11 +0.8
260,581 + EX31_RS08760 0.12 +0.9
260,681 - EX31_RS08760 0.26 +0.1
260,681 - EX31_RS08760 0.26 +0.2
260,747 + EX31_RS08760 0.34 -0.3
260,747 + EX31_RS08760 0.34 +0.1
260,747 + EX31_RS08760 0.34 +0.7
260,748 - EX31_RS08760 0.35 -0.5
260,748 - EX31_RS08760 0.35 -0.6
260,778 + EX31_RS08760 0.39 -0.2
260,778 + EX31_RS08760 0.39 +0.1
260,778 + EX31_RS08760 0.39 +0.2
260,778 + EX31_RS08760 0.39 -1.2
260,778 + EX31_RS08760 0.39 -2.0
260,778 + EX31_RS08760 0.39 +0.5
260,779 - EX31_RS08760 0.39 -1.7
260,779 - EX31_RS08760 0.39 +1.1
260,779 - EX31_RS08760 0.39 +1.1
260,779 - EX31_RS08760 0.39 -0.4
260,779 - EX31_RS08760 0.39 +0.4
260,779 - EX31_RS08760 0.39 +0.1
260,779 - EX31_RS08760 0.39 -1.3
260,779 - EX31_RS08760 0.39 -0.3
260,779 - EX31_RS08760 0.39 -1.1
260,779 - EX31_RS08760 0.39 +1.3
260,779 - EX31_RS08760 0.39 +0.6
260,801 + EX31_RS08760 0.42 -1.2
260,802 - EX31_RS08760 0.42 -2.1
260,802 - EX31_RS08760 0.42 +0.1
260,846 - EX31_RS08760 0.48 -0.3
260,913 - EX31_RS08760 0.57 +0.7
261,050 + EX31_RS08760 0.75 -1.8
261,051 - EX31_RS08760 0.75 +0.8
261,065 + EX31_RS08760 0.77 -1.2
261,097 - EX31_RS08760 0.81 -1.5
261,105 + EX31_RS08760 0.82 +0.9
261,105 + EX31_RS08760 0.82 +0.2
261,105 + EX31_RS08760 0.82 +0.2
261,106 - EX31_RS08760 0.82 -0.9
261,111 + EX31_RS08760 0.83 +0.1
261,111 + EX31_RS08760 0.83 -0.2
261,112 - EX31_RS08760 0.83 -0.5
261,112 - EX31_RS08760 0.83 +0.2
261,112 - EX31_RS08760 0.83 -0.0
261,112 - EX31_RS08760 0.83 +0.5
261,171 + +0.3
261,215 - +0.2
261,215 - +0.3
261,225 + -0.1
261,225 + -0.0
261,225 + -0.7
261,225 + +0.5
261,225 + -0.6
261,225 + +0.5
261,225 + -0.6
261,226 - +0.9
261,226 - +0.5
261,226 - -0.9
261,226 - +1.0
261,226 - -0.3
261,226 - +0.3
261,226 - -0.1
261,226 - -0.2
261,226 - -0.2
261,226 - +0.5
261,226 - +0.6
261,226 - +0.6
261,295 + -0.6
261,295 + -0.4
261,296 - -0.3
261,332 - -0.3
261,332 - +0.8
261,338 + +0.5

Or see this region's nucleotide sequence