Strain Fitness in Rahnella sp. WP5 around EX31_RS00845

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00835 and EX31_RS00840 overlap by 8 nucleotidesEX31_RS00840 and EX31_RS00845 are separated by 48 nucleotidesEX31_RS00845 and EX31_RS00850 are separated by 534 nucleotides EX31_RS00835: EX31_RS00835 - branched-chain amino acid ABC transporter permease, at 181,425 to 182,312 _RS00835 EX31_RS00840: EX31_RS00840 - branched-chain amino acid ABC transporter permease, at 182,305 to 183,198 _RS00840 EX31_RS00845: EX31_RS00845 - ABC transporter substrate-binding protein, at 183,247 to 184,374 _RS00845 EX31_RS00850: EX31_RS00850 - GntR family transcriptional regulator, at 184,909 to 185,610 _RS00850 Position (kb) 183 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3at 182.269 kb on + strandat 182.269 kb on + strandat 182.270 kb on - strandat 182.291 kb on + strandat 182.291 kb on + strandat 182.350 kb on + strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.413 kb on + strand, within EX31_RS00840at 182.414 kb on - strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.649 kb on + strand, within EX31_RS00840at 182.650 kb on - strand, within EX31_RS00840at 182.849 kb on + strand, within EX31_RS00840at 182.850 kb on - strand, within EX31_RS00840at 182.906 kb on - strand, within EX31_RS00840at 183.064 kb on - strand, within EX31_RS00840at 183.083 kb on + strand, within EX31_RS00840at 183.084 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.134 kb on - strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.236 kb on - strandat 183.290 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.304 kb on - strandat 183.304 kb on - strandat 183.304 kb on - strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.329 kb on - strandat 183.436 kb on + strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.438 kb on - strand, within EX31_RS00845at 183.453 kb on - strand, within EX31_RS00845at 183.457 kb on - strand, within EX31_RS00845at 183.457 kb on - strand, within EX31_RS00845at 183.462 kb on - strand, within EX31_RS00845at 183.462 kb on - strand, within EX31_RS00845at 183.498 kb on - strand, within EX31_RS00845at 183.509 kb on + strand, within EX31_RS00845at 183.509 kb on + strand, within EX31_RS00845at 183.510 kb on - strand, within EX31_RS00845at 183.514 kb on + strand, within EX31_RS00845at 183.546 kb on + strand, within EX31_RS00845at 183.546 kb on + strand, within EX31_RS00845at 183.581 kb on + strand, within EX31_RS00845at 183.614 kb on - strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.693 kb on - strand, within EX31_RS00845at 183.702 kb on - strand, within EX31_RS00845at 183.707 kb on + strand, within EX31_RS00845at 183.707 kb on + strand, within EX31_RS00845at 183.708 kb on - strand, within EX31_RS00845at 183.708 kb on - strand, within EX31_RS00845at 183.752 kb on + strand, within EX31_RS00845at 183.773 kb on + strand, within EX31_RS00845at 183.849 kb on - strand, within EX31_RS00845at 184.028 kb on + strand, within EX31_RS00845at 184.029 kb on - strand, within EX31_RS00845at 184.099 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.162 kb on + strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845at 184.327 kb on - strandat 184.327 kb on - strandat 184.455 kb on - strandat 184.557 kb on + strandat 184.557 kb on + strandat 184.829 kb on - strandat 184.829 kb on - strandat 184.832 kb on + strandat 184.993 kb on + strand, within EX31_RS00850at 184.994 kb on - strand, within EX31_RS00850at 185.167 kb on + strand, within EX31_RS00850at 185.184 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.186 kb on + strand, within EX31_RS00850at 185.187 kb on - strand, within EX31_RS00850at 185.345 kb on + strand, within EX31_RS00850at 185.345 kb on + strand, within EX31_RS00850at 185.352 kb on + strand, within EX31_RS00850at 185.364 kb on + strand, within EX31_RS00850at 185.365 kb on - strand, within EX31_RS00850

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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182,269 + -1.8
182,269 + +1.9
182,270 - +1.1
182,291 + +0.3
182,291 + +0.6
182,350 + +1.2
182,351 - +2.0
182,351 - +0.6
182,351 - -1.0
182,413 + EX31_RS00840 0.12 +0.8
182,414 - EX31_RS00840 0.12 -0.0
182,598 + EX31_RS00840 0.33 -0.4
182,598 + EX31_RS00840 0.33 -0.9
182,598 + EX31_RS00840 0.33 -0.0
182,649 + EX31_RS00840 0.38 +1.4
182,650 - EX31_RS00840 0.39 +0.4
182,849 + EX31_RS00840 0.61 -0.5
182,850 - EX31_RS00840 0.61 -0.0
182,906 - EX31_RS00840 0.67 +0.2
183,064 - EX31_RS00840 0.85 +1.8
183,083 + EX31_RS00840 0.87 +0.2
183,084 - EX31_RS00840 0.87 +0.7
183,091 - EX31_RS00840 0.88 -0.4
183,091 - EX31_RS00840 0.88 +0.4
183,134 - +0.7
183,177 + +0.5
183,177 + +1.0
183,177 + -0.2
183,177 + -2.2
183,178 - +1.0
183,178 - +0.1
183,178 - +2.0
183,178 - -0.3
183,236 - +1.0
183,290 + -0.1
183,303 + -0.5
183,303 + -0.0
183,303 + -1.0
183,304 - +0.4
183,304 - -0.4
183,304 - -0.0
183,328 + -0.7
183,328 + -1.3
183,328 + +0.7
183,328 + -0.4
183,329 - +0.7
183,436 + EX31_RS00845 0.17 +2.0
183,437 - EX31_RS00845 0.17 +0.5
183,437 - EX31_RS00845 0.17 +0.8
183,437 - EX31_RS00845 0.17 +2.7
183,438 - EX31_RS00845 0.17 -1.6
183,453 - EX31_RS00845 0.18 -0.0
183,457 - EX31_RS00845 0.19 +1.0
183,457 - EX31_RS00845 0.19 +1.4
183,462 - EX31_RS00845 0.19 -0.4
183,462 - EX31_RS00845 0.19 +0.2
183,498 - EX31_RS00845 0.22 +0.3
183,509 + EX31_RS00845 0.23 +0.5
183,509 + EX31_RS00845 0.23 +1.0
183,510 - EX31_RS00845 0.23 -0.2
183,514 + EX31_RS00845 0.24 -1.0
183,546 + EX31_RS00845 0.27 +0.6
183,546 + EX31_RS00845 0.27 +0.6
183,581 + EX31_RS00845 0.30 +1.4
183,614 - EX31_RS00845 0.33 +0.3
183,617 + EX31_RS00845 0.33 +0.6
183,617 + EX31_RS00845 0.33 -1.2
183,617 + EX31_RS00845 0.33 -0.0
183,617 + EX31_RS00845 0.33 +0.7
183,617 + EX31_RS00845 0.33 +2.0
183,618 - EX31_RS00845 0.33 +0.5
183,618 - EX31_RS00845 0.33 +0.3
183,618 - EX31_RS00845 0.33 +1.0
183,693 - EX31_RS00845 0.40 -0.0
183,702 - EX31_RS00845 0.40 +1.0
183,707 + EX31_RS00845 0.41 +0.0
183,707 + EX31_RS00845 0.41 +0.6
183,708 - EX31_RS00845 0.41 -1.4
183,708 - EX31_RS00845 0.41 +0.1
183,752 + EX31_RS00845 0.45 +0.2
183,773 + EX31_RS00845 0.47 +0.7
183,849 - EX31_RS00845 0.53 -0.9
184,028 + EX31_RS00845 0.69 -1.4
184,029 - EX31_RS00845 0.69 +1.1
184,099 + EX31_RS00845 0.76 -2.4
184,104 + EX31_RS00845 0.76 -0.4
184,104 + EX31_RS00845 0.76 +1.0
184,104 + EX31_RS00845 0.76 +0.2
184,105 - EX31_RS00845 0.76 +1.6
184,105 - EX31_RS00845 0.76 +3.5
184,162 + EX31_RS00845 0.81 +1.3
184,163 - EX31_RS00845 0.81 -0.4
184,163 - EX31_RS00845 0.81 -0.2
184,327 - +0.2
184,327 - -2.5
184,455 - +1.2
184,557 + -0.3
184,557 + +0.2
184,829 - +1.5
184,829 - -1.0
184,832 + +1.4
184,993 + EX31_RS00850 0.12 -0.0
184,994 - EX31_RS00850 0.12 -0.6
185,167 + EX31_RS00850 0.37 +0.4
185,184 + EX31_RS00850 0.39 +0.7
185,186 + EX31_RS00850 0.39 +0.7
185,186 + EX31_RS00850 0.39 -0.5
185,186 + EX31_RS00850 0.39 +2.5
185,187 - EX31_RS00850 0.40 +3.3
185,345 + EX31_RS00850 0.62 -1.6
185,345 + EX31_RS00850 0.62 -0.5
185,352 + EX31_RS00850 0.63 +0.4
185,364 + EX31_RS00850 0.65 +1.3
185,365 - EX31_RS00850 0.65 +0.0

Or see this region's nucleotide sequence