Strain Fitness in Rahnella sp. WP5 around EX31_RS00440

Experiment: L-Glutamine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00435 and EX31_RS00440 are separated by 250 nucleotidesEX31_RS00440 and EX31_RS00445 are separated by 214 nucleotides EX31_RS00435: EX31_RS00435 - carbohydrate porin, at 92,743 to 94,323 _RS00435 EX31_RS00440: EX31_RS00440 - aminoimidazole riboside kinase, at 94,574 to 95,512 _RS00440 EX31_RS00445: EX31_RS00445 - outer membrane protein assembly factor BamA, at 95,727 to 98,150 _RS00445 Position (kb) 94 95 96Strain fitness (log2 ratio) -2 -1 0 1 2at 93.727 kb on + strand, within EX31_RS00435at 93.727 kb on + strand, within EX31_RS00435at 93.727 kb on + strand, within EX31_RS00435at 93.727 kb on + strand, within EX31_RS00435at 93.758 kb on + strand, within EX31_RS00435at 93.758 kb on + strand, within EX31_RS00435at 93.758 kb on + strand, within EX31_RS00435at 93.758 kb on + strand, within EX31_RS00435at 93.791 kb on + strand, within EX31_RS00435at 93.848 kb on + strand, within EX31_RS00435at 93.849 kb on - strand, within EX31_RS00435at 93.849 kb on - strand, within EX31_RS00435at 93.849 kb on - strand, within EX31_RS00435at 93.849 kb on - strand, within EX31_RS00435at 93.912 kb on - strand, within EX31_RS00435at 93.968 kb on + strand, within EX31_RS00435at 93.982 kb on - strand, within EX31_RS00435at 94.009 kb on - strand, within EX31_RS00435at 94.158 kb on + strand, within EX31_RS00435at 94.159 kb on - strand, within EX31_RS00435at 94.201 kb on + strandat 94.281 kb on + strandat 94.347 kb on - strandat 94.404 kb on - strandat 94.414 kb on + strandat 94.422 kb on + strandat 94.423 kb on - strandat 94.533 kb on + strandat 94.548 kb on + strandat 94.549 kb on - strandat 94.714 kb on + strand, within EX31_RS00440at 94.784 kb on - strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.792 kb on + strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.793 kb on - strand, within EX31_RS00440at 94.796 kb on + strand, within EX31_RS00440at 94.816 kb on + strand, within EX31_RS00440at 94.817 kb on - strand, within EX31_RS00440at 94.893 kb on + strand, within EX31_RS00440at 94.893 kb on + strand, within EX31_RS00440at 94.894 kb on - strand, within EX31_RS00440at 94.947 kb on + strand, within EX31_RS00440at 94.947 kb on + strand, within EX31_RS00440at 94.947 kb on + strand, within EX31_RS00440at 94.948 kb on - strand, within EX31_RS00440at 95.027 kb on + strand, within EX31_RS00440at 95.027 kb on + strand, within EX31_RS00440at 95.027 kb on + strand, within EX31_RS00440at 95.027 kb on + strand, within EX31_RS00440at 95.028 kb on - strand, within EX31_RS00440at 95.028 kb on - strand, within EX31_RS00440at 95.028 kb on - strand, within EX31_RS00440at 95.028 kb on - strand, within EX31_RS00440at 95.028 kb on - strand, within EX31_RS00440at 95.116 kb on + strand, within EX31_RS00440at 95.204 kb on + strand, within EX31_RS00440at 95.206 kb on + strand, within EX31_RS00440at 95.206 kb on + strand, within EX31_RS00440at 95.266 kb on + strand, within EX31_RS00440at 95.314 kb on + strand, within EX31_RS00440at 95.561 kb on + strandat 95.566 kb on + strandat 95.567 kb on - strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.627 kb on + strandat 95.628 kb on - strandat 95.628 kb on - strandat 95.628 kb on - strandat 95.628 kb on - strandat 95.629 kb on + strandat 95.629 kb on + strandat 95.629 kb on + strandat 95.629 kb on + strandat 95.629 kb on + strandat 95.629 kb on + strandat 95.630 kb on - strandat 95.630 kb on - strandat 95.630 kb on - strandat 95.630 kb on - strandat 95.630 kb on - strandat 95.631 kb on + strandat 95.631 kb on + strandat 95.631 kb on + strandat 95.631 kb on + strandat 95.631 kb on + strandat 95.632 kb on - strandat 95.632 kb on - strandat 95.632 kb on - strandat 95.656 kb on - strandat 95.675 kb on + strandat 95.749 kb on + strandat 96.018 kb on - strand, within EX31_RS00445at 96.018 kb on - strand, within EX31_RS00445at 96.178 kb on + strand, within EX31_RS00445at 96.281 kb on + strand, within EX31_RS00445at 96.290 kb on + strand, within EX31_RS00445at 96.322 kb on + strand, within EX31_RS00445at 96.323 kb on - strand, within EX31_RS00445at 96.441 kb on - strand, within EX31_RS00445at 96.489 kb on + strand, within EX31_RS00445at 96.489 kb on + strand, within EX31_RS00445at 96.489 kb on + strand, within EX31_RS00445at 96.489 kb on + strand, within EX31_RS00445at 96.492 kb on - strand, within EX31_RS00445at 96.503 kb on + strand, within EX31_RS00445at 96.506 kb on + strand, within EX31_RS00445at 96.506 kb on + strand, within EX31_RS00445

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N); RCH2 media; shaking
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93,727 + EX31_RS00435 0.62 -1.1
93,727 + EX31_RS00435 0.62 -0.3
93,727 + EX31_RS00435 0.62 +0.5
93,727 + EX31_RS00435 0.62 +0.8
93,758 + EX31_RS00435 0.64 +0.1
93,758 + EX31_RS00435 0.64 -1.2
93,758 + EX31_RS00435 0.64 +0.1
93,758 + EX31_RS00435 0.64 +0.4
93,791 + EX31_RS00435 0.66 -1.7
93,848 + EX31_RS00435 0.70 +0.3
93,849 - EX31_RS00435 0.70 -1.8
93,849 - EX31_RS00435 0.70 -0.6
93,849 - EX31_RS00435 0.70 +0.5
93,849 - EX31_RS00435 0.70 -0.0
93,912 - EX31_RS00435 0.74 +1.6
93,968 + EX31_RS00435 0.77 +0.8
93,982 - EX31_RS00435 0.78 +1.9
94,009 - EX31_RS00435 0.80 +0.2
94,158 + EX31_RS00435 0.90 +0.5
94,159 - EX31_RS00435 0.90 -0.6
94,201 + +0.6
94,281 + +1.8
94,347 - +0.1
94,404 - -0.6
94,414 + +0.6
94,422 + +0.2
94,423 - -0.5
94,533 + +0.5
94,548 + +1.0
94,549 - -0.5
94,714 + EX31_RS00440 0.15 -0.3
94,784 - EX31_RS00440 0.22 -0.9
94,792 + EX31_RS00440 0.23 -0.9
94,792 + EX31_RS00440 0.23 +0.6
94,792 + EX31_RS00440 0.23 +0.8
94,792 + EX31_RS00440 0.23 +0.4
94,792 + EX31_RS00440 0.23 -1.4
94,792 + EX31_RS00440 0.23 -0.0
94,792 + EX31_RS00440 0.23 -0.2
94,792 + EX31_RS00440 0.23 -0.9
94,792 + EX31_RS00440 0.23 +0.0
94,792 + EX31_RS00440 0.23 -0.6
94,792 + EX31_RS00440 0.23 +0.2
94,792 + EX31_RS00440 0.23 -1.7
94,792 + EX31_RS00440 0.23 +1.4
94,792 + EX31_RS00440 0.23 -0.1
94,793 - EX31_RS00440 0.23 +0.2
94,793 - EX31_RS00440 0.23 +1.4
94,793 - EX31_RS00440 0.23 -0.3
94,793 - EX31_RS00440 0.23 -1.3
94,793 - EX31_RS00440 0.23 +0.2
94,793 - EX31_RS00440 0.23 +0.2
94,796 + EX31_RS00440 0.24 +0.2
94,816 + EX31_RS00440 0.26 -0.5
94,817 - EX31_RS00440 0.26 +0.0
94,893 + EX31_RS00440 0.34 -2.3
94,893 + EX31_RS00440 0.34 -0.3
94,894 - EX31_RS00440 0.34 +0.8
94,947 + EX31_RS00440 0.40 +0.6
94,947 + EX31_RS00440 0.40 +0.4
94,947 + EX31_RS00440 0.40 -0.0
94,948 - EX31_RS00440 0.40 -0.0
95,027 + EX31_RS00440 0.48 +0.5
95,027 + EX31_RS00440 0.48 -0.2
95,027 + EX31_RS00440 0.48 +0.6
95,027 + EX31_RS00440 0.48 +0.3
95,028 - EX31_RS00440 0.48 +0.6
95,028 - EX31_RS00440 0.48 -1.0
95,028 - EX31_RS00440 0.48 -2.1
95,028 - EX31_RS00440 0.48 -1.3
95,028 - EX31_RS00440 0.48 +0.0
95,116 + EX31_RS00440 0.58 -0.2
95,204 + EX31_RS00440 0.67 +0.0
95,206 + EX31_RS00440 0.67 -0.6
95,206 + EX31_RS00440 0.67 -0.0
95,266 + EX31_RS00440 0.74 +0.7
95,314 + EX31_RS00440 0.79 -0.0
95,561 + +2.0
95,566 + +0.1
95,567 - -0.3
95,627 + -0.7
95,627 + -0.7
95,627 + -0.2
95,627 + -1.7
95,627 + -1.6
95,627 + -1.3
95,627 + -0.5
95,627 + +0.3
95,627 + -0.5
95,628 - -0.1
95,628 - +0.2
95,628 - +1.4
95,628 - +0.7
95,629 + +0.4
95,629 + +0.3
95,629 + -0.2
95,629 + -1.2
95,629 + +1.0
95,629 + -0.3
95,630 - -1.3
95,630 - +1.2
95,630 - -0.2
95,630 - +0.0
95,630 - -0.7
95,631 + -1.9
95,631 + +1.3
95,631 + +0.2
95,631 + +0.2
95,631 + -1.2
95,632 - +0.6
95,632 - +1.3
95,632 - -1.0
95,656 - +0.4
95,675 + -0.2
95,749 + -0.5
96,018 - EX31_RS00445 0.12 -0.6
96,018 - EX31_RS00445 0.12 +1.2
96,178 + EX31_RS00445 0.19 +1.7
96,281 + EX31_RS00445 0.23 +1.2
96,290 + EX31_RS00445 0.23 -0.4
96,322 + EX31_RS00445 0.25 -0.6
96,323 - EX31_RS00445 0.25 -1.3
96,441 - EX31_RS00445 0.29 -0.5
96,489 + EX31_RS00445 0.31 +1.5
96,489 + EX31_RS00445 0.31 -0.0
96,489 + EX31_RS00445 0.31 +0.4
96,489 + EX31_RS00445 0.31 +1.2
96,492 - EX31_RS00445 0.32 -1.6
96,503 + EX31_RS00445 0.32 +0.9
96,506 + EX31_RS00445 0.32 +1.5
96,506 + EX31_RS00445 0.32 +0.3

Or see this region's nucleotide sequence