Experiment: L-Asparagine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00103 and CCNA_00104 are separated by 128 nucleotides CCNA_00104 and CCNA_00105 are separated by 97 nucleotides CCNA_00105 and CCNA_00106 are separated by 47 nucleotides
CCNA_00103: CCNA_00103 - gamma-glutamyltranspeptidase, at 113,463 to 115,160
_00103
CCNA_00104: CCNA_00104 - orotidine 5'-phosphate decarboxylase, at 115,289 to 115,990
_00104
CCNA_00105: CCNA_00105 - MarC family integral membrane protein, at 116,088 to 116,786
_00105
CCNA_00106: CCNA_00106 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 116,834 to 118,099
_00106
Position (kb)
116
117 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.092 kb on + strand at 115.092 kb on + strand at 115.108 kb on - strand at 115.112 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.138 kb on + strand at 115.146 kb on - strand at 115.146 kb on - strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.176 kb on + strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.184 kb on - strand at 115.212 kb on - strand at 115.255 kb on - strand at 115.282 kb on + strand at 115.289 kb on - strand at 115.375 kb on - strand, within CCNA_00104 at 115.395 kb on + strand, within CCNA_00104 at 115.448 kb on - strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.508 kb on + strand, within CCNA_00104 at 115.516 kb on - strand, within CCNA_00104 at 115.516 kb on - strand, within CCNA_00104 at 115.549 kb on - strand, within CCNA_00104 at 115.551 kb on + strand, within CCNA_00104 at 115.551 kb on + strand, within CCNA_00104 at 115.556 kb on + strand, within CCNA_00104 at 115.556 kb on + strand, within CCNA_00104 at 115.559 kb on - strand, within CCNA_00104 at 115.562 kb on + strand, within CCNA_00104 at 115.564 kb on - strand, within CCNA_00104 at 115.564 kb on - strand, within CCNA_00104 at 115.577 kb on + strand, within CCNA_00104 at 115.618 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.651 kb on - strand, within CCNA_00104 at 115.667 kb on - strand, within CCNA_00104 at 115.731 kb on + strand, within CCNA_00104 at 115.739 kb on - strand, within CCNA_00104 at 115.746 kb on - strand, within CCNA_00104 at 115.756 kb on + strand, within CCNA_00104 at 115.760 kb on + strand, within CCNA_00104 at 115.760 kb on + strand, within CCNA_00104 at 115.762 kb on - strand, within CCNA_00104 at 115.763 kb on - strand, within CCNA_00104 at 115.768 kb on - strand, within CCNA_00104 at 115.780 kb on - strand, within CCNA_00104 at 115.802 kb on - strand, within CCNA_00104 at 115.827 kb on + strand, within CCNA_00104 at 115.852 kb on + strand, within CCNA_00104 at 115.884 kb on - strand, within CCNA_00104 at 115.916 kb on - strand, within CCNA_00104 at 115.954 kb on + strand at 115.955 kb on - strand at 115.967 kb on + strand at 115.978 kb on + strand at 115.986 kb on - strand at 116.018 kb on + strand at 116.025 kb on - strand at 116.039 kb on + strand at 116.064 kb on - strand at 116.720 kb on + strand at 116.770 kb on - strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.794 kb on + strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.802 kb on - strand at 116.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (N) remove 115,092 + +1.2 115,092 + +0.7 115,108 - -0.1 115,112 + -0.6 115,138 + +2.1 115,138 + -0.5 115,138 + +0.7 115,138 + -0.1 115,138 + +0.8 115,138 + +0.6 115,146 - +0.2 115,146 - +0.2 115,176 + +1.0 115,176 + -0.5 115,176 + +1.6 115,176 + +1.1 115,176 + +1.1 115,176 + +1.3 115,176 + +1.5 115,184 - -1.0 115,184 - +0.2 115,184 - -0.5 115,184 - -0.4 115,184 - -0.5 115,184 - +0.2 115,184 - +0.9 115,212 - +0.4 115,255 - +1.1 115,282 + +0.1 115,289 - +1.2 115,375 - CCNA_00104 0.12 -2.6 115,395 + CCNA_00104 0.15 -2.1 115,448 - CCNA_00104 0.23 -2.6 115,508 + CCNA_00104 0.31 -0.2 115,508 + CCNA_00104 0.31 -1.1 115,508 + CCNA_00104 0.31 -0.5 115,516 - CCNA_00104 0.32 +0.7 115,516 - CCNA_00104 0.32 -0.7 115,549 - CCNA_00104 0.37 -2.0 115,551 + CCNA_00104 0.37 -2.8 115,551 + CCNA_00104 0.37 -1.0 115,556 + CCNA_00104 0.38 -2.0 115,556 + CCNA_00104 0.38 -1.1 115,559 - CCNA_00104 0.38 -1.3 115,562 + CCNA_00104 0.39 -1.7 115,564 - CCNA_00104 0.39 -1.4 115,564 - CCNA_00104 0.39 -1.4 115,577 + CCNA_00104 0.41 -2.7 115,618 - CCNA_00104 0.47 -3.2 115,651 - CCNA_00104 0.52 -2.6 115,651 - CCNA_00104 0.52 -0.7 115,651 - CCNA_00104 0.52 -2.0 115,667 - CCNA_00104 0.54 -2.2 115,731 + CCNA_00104 0.63 -1.2 115,739 - CCNA_00104 0.64 -0.3 115,746 - CCNA_00104 0.65 -0.3 115,756 + CCNA_00104 0.67 +0.5 115,760 + CCNA_00104 0.67 -1.1 115,760 + CCNA_00104 0.67 -2.7 115,762 - CCNA_00104 0.67 -1.8 115,763 - CCNA_00104 0.68 -1.5 115,768 - CCNA_00104 0.68 -1.8 115,780 - CCNA_00104 0.70 -0.3 115,802 - CCNA_00104 0.73 -0.6 115,827 + CCNA_00104 0.77 -2.0 115,852 + CCNA_00104 0.80 -1.3 115,884 - CCNA_00104 0.85 -0.4 115,916 - CCNA_00104 0.89 -2.8 115,954 + -1.5 115,955 - -2.1 115,967 + -2.9 115,978 + -0.5 115,986 - -1.1 116,018 + -0.8 116,025 - -0.2 116,039 + -1.8 116,064 - -2.5 116,720 + -2.1 116,770 - -0.3 116,794 + -0.5 116,794 + +2.8 116,794 + +1.6 116,802 - +0.6 116,802 - -0.6 116,802 - -1.0 116,802 - -1.2 116,802 - -1.9 116,802 - +0.2 116,867 + +1.6
Or see this region's nucleotide sequence