Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_566

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_381 and Ac3H11_566 are separated by 178 nucleotidesAc3H11_566 and Ac3H11_382 are separated by 194 nucleotides Ac3H11_381 - Integrase, at 57,558 to 58,805 _381 Ac3H11_566 - tRNA-Arg-TCT, at 58,984 to 59,057 _566 Ac3H11_382 - TrkA-N:Sodium/hydrogen exchanger, at 59,252 to 60,991 _382 Position (kb) 58 59 60Strain fitness (log2 ratio) -1 0 1at 58.018 kb on - strand, within Ac3H11_381at 58.018 kb on - strand, within Ac3H11_381at 58.132 kb on + strand, within Ac3H11_381at 58.132 kb on + strand, within Ac3H11_381at 58.132 kb on + strand, within Ac3H11_381at 58.132 kb on + strand, within Ac3H11_381at 58.133 kb on - strand, within Ac3H11_381at 58.133 kb on - strand, within Ac3H11_381at 58.149 kb on + strand, within Ac3H11_381at 58.150 kb on - strand, within Ac3H11_381at 58.205 kb on + strand, within Ac3H11_381at 58.206 kb on - strand, within Ac3H11_381at 58.336 kb on - strand, within Ac3H11_381at 58.336 kb on - strand, within Ac3H11_381at 58.336 kb on - strand, within Ac3H11_381at 58.399 kb on + strand, within Ac3H11_381at 58.400 kb on - strand, within Ac3H11_381at 58.429 kb on - strand, within Ac3H11_381at 58.429 kb on - strand, within Ac3H11_381at 58.444 kb on + strand, within Ac3H11_381at 58.445 kb on - strand, within Ac3H11_381at 58.518 kb on + strand, within Ac3H11_381at 58.518 kb on + strand, within Ac3H11_381at 58.519 kb on - strand, within Ac3H11_381at 58.519 kb on - strand, within Ac3H11_381at 58.563 kb on + strand, within Ac3H11_381at 58.563 kb on + strand, within Ac3H11_381at 58.563 kb on + strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.564 kb on - strand, within Ac3H11_381at 58.633 kb on + strand, within Ac3H11_381at 58.675 kb on + strand, within Ac3H11_381at 58.675 kb on + strand, within Ac3H11_381at 58.676 kb on - strand, within Ac3H11_381at 58.676 kb on - strand, within Ac3H11_381at 58.676 kb on - strand, within Ac3H11_381at 58.676 kb on - strand, within Ac3H11_381at 58.690 kb on + strandat 58.690 kb on + strandat 58.690 kb on + strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.691 kb on - strandat 58.718 kb on - strandat 58.718 kb on - strandat 58.782 kb on + strandat 58.782 kb on + strandat 58.796 kb on + strandat 58.823 kb on + strandat 58.877 kb on + strandat 58.877 kb on + strandat 58.877 kb on + strandat 58.878 kb on - strandat 58.933 kb on - strandat 58.977 kb on + strandat 58.977 kb on + strandat 58.978 kb on - strandat 59.081 kb on - strandat 59.197 kb on - strandat 59.198 kb on + strandat 59.198 kb on + strandat 59.198 kb on + strandat 59.198 kb on + strandat 59.199 kb on - strandat 59.199 kb on - strandat 59.357 kb on + strandat 59.560 kb on + strand, within Ac3H11_382at 59.560 kb on + strand, within Ac3H11_382at 59.561 kb on - strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.684 kb on + strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382at 59.685 kb on - strand, within Ac3H11_382

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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58,018 - Ac3H11_381 0.37 -0.1
58,018 - Ac3H11_381 0.37 +0.1
58,132 + Ac3H11_381 0.46 -0.3
58,132 + Ac3H11_381 0.46 -0.5
58,132 + Ac3H11_381 0.46 +0.4
58,132 + Ac3H11_381 0.46 -0.0
58,133 - Ac3H11_381 0.46 +0.6
58,133 - Ac3H11_381 0.46 -0.7
58,149 + Ac3H11_381 0.47 -0.2
58,150 - Ac3H11_381 0.47 +0.5
58,205 + Ac3H11_381 0.52 -0.2
58,206 - Ac3H11_381 0.52 +0.1
58,336 - Ac3H11_381 0.62 +0.5
58,336 - Ac3H11_381 0.62 +1.2
58,336 - Ac3H11_381 0.62 +0.1
58,399 + Ac3H11_381 0.67 -1.0
58,400 - Ac3H11_381 0.67 -1.4
58,429 - Ac3H11_381 0.70 -0.1
58,429 - Ac3H11_381 0.70 -0.3
58,444 + Ac3H11_381 0.71 -0.5
58,445 - Ac3H11_381 0.71 +0.7
58,518 + Ac3H11_381 0.77 -0.0
58,518 + Ac3H11_381 0.77 +0.3
58,519 - Ac3H11_381 0.77 -1.4
58,519 - Ac3H11_381 0.77 -0.7
58,563 + Ac3H11_381 0.81 -0.1
58,563 + Ac3H11_381 0.81 -0.5
58,563 + Ac3H11_381 0.81 -0.3
58,564 - Ac3H11_381 0.81 -0.1
58,564 - Ac3H11_381 0.81 -0.2
58,564 - Ac3H11_381 0.81 -0.8
58,564 - Ac3H11_381 0.81 -1.2
58,564 - Ac3H11_381 0.81 -0.2
58,564 - Ac3H11_381 0.81 -0.2
58,564 - Ac3H11_381 0.81 -0.9
58,564 - Ac3H11_381 0.81 +0.4
58,633 + Ac3H11_381 0.86 -1.0
58,675 + Ac3H11_381 0.90 +0.2
58,675 + Ac3H11_381 0.90 -0.3
58,676 - Ac3H11_381 0.90 -0.5
58,676 - Ac3H11_381 0.90 +1.1
58,676 - Ac3H11_381 0.90 +0.3
58,676 - Ac3H11_381 0.90 +0.3
58,690 + +0.0
58,690 + -0.4
58,690 + -0.3
58,691 - +0.1
58,691 - -1.0
58,691 - -1.2
58,691 - +0.7
58,691 - +0.1
58,691 - +0.5
58,691 - +0.5
58,718 - -0.4
58,718 - -0.6
58,782 + -0.0
58,782 + +0.0
58,796 + +0.8
58,823 + +0.4
58,877 + +0.3
58,877 + +0.7
58,877 + +0.4
58,878 - +0.4
58,933 - +0.5
58,977 + -0.3
58,977 + -0.2
58,978 - -0.2
59,081 - -0.4
59,197 - -0.5
59,198 + -0.3
59,198 + -0.8
59,198 + -0.0
59,198 + +0.3
59,199 - -0.4
59,199 - -0.1
59,357 + +0.2
59,560 + Ac3H11_382 0.18 -0.5
59,560 + Ac3H11_382 0.18 -0.9
59,561 - Ac3H11_382 0.18 +0.2
59,684 + Ac3H11_382 0.25 +0.8
59,684 + Ac3H11_382 0.25 +0.2
59,684 + Ac3H11_382 0.25 +0.4
59,684 + Ac3H11_382 0.25 +0.7
59,684 + Ac3H11_382 0.25 -0.1
59,684 + Ac3H11_382 0.25 -0.2
59,684 + Ac3H11_382 0.25 -0.6
59,685 - Ac3H11_382 0.25 +0.7
59,685 - Ac3H11_382 0.25 +0.6
59,685 - Ac3H11_382 0.25 -0.1
59,685 - Ac3H11_382 0.25 -0.1
59,685 - Ac3H11_382 0.25 -0.0
59,685 - Ac3H11_382 0.25 +0.5
59,685 - Ac3H11_382 0.25 -1.4

Or see this region's nucleotide sequence