Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3648

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3452 and Ac3H11_3648 are separated by 50 nucleotidesAc3H11_3648 and Ac3H11_3453 are separated by 30 nucleotidesAc3H11_3453 and Ac3H11_3454 are separated by 58 nucleotides Ac3H11_3452 - Ribose-phosphate pyrophosphokinase (EC 2.7.6.1), at 1,811 to 2,785 _3452 Ac3H11_3648 - tRNA-Gln-TTG, at 2,836 to 2,909 _3648 Ac3H11_3453 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 2,940 to 3,779 _3453 Ac3H11_3454 - Outer membrane lipoprotein LolB, at 3,838 to 4,326 _3454 Position (kb) 2 3Strain fitness (log2 ratio) -1 0 1at 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 2.830 kb on - strandat 3.819 kb on + strandat 3.820 kb on - strandat 3.820 kb on - strandat 3.820 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,830 - +0.3
2,830 - -0.6
2,830 - -0.4
2,830 - +0.3
2,830 - +0.2
3,819 + -1.2
3,820 - -0.1
3,820 - +0.2
3,820 - -0.1

Or see this region's nucleotide sequence