Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3639

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3638 and Ac3H11_3639 are separated by 55 nucleotidesAc3H11_3639 and Ac3H11_3640 are separated by 159 nucleotides Ac3H11_3638 - Biotin synthesis protein BioH, at 196,837 to 197,658 _3638 Ac3H11_3639 - FIG00537048: hypothetical protein, at 197,714 to 198,541 _3639 Ac3H11_3640 - Lysophospholipase (EC 3.1.1.5), at 198,701 to 200,005 _3640 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1at 196.805 kb on - strandat 196.805 kb on - strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.806 kb on + strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 196.807 kb on - strandat 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.090 kb on + strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.091 kb on - strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.165 kb on + strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.166 kb on - strand, within Ac3H11_3638at 197.609 kb on + strandat 197.609 kb on + strandat 197.609 kb on + strandat 197.610 kb on - strandat 197.610 kb on - strandat 197.614 kb on - strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.715 kb on + strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.716 kb on - strandat 197.719 kb on + strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.720 kb on - strandat 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.880 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.906 kb on + strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.907 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 197.938 kb on - strand, within Ac3H11_3639at 198.072 kb on + strand, within Ac3H11_3639at 198.096 kb on + strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.097 kb on - strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.138 kb on + strand, within Ac3H11_3639at 198.139 kb on - strand, within Ac3H11_3639at 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.534 kb on + strandat 198.535 kb on - strandat 198.581 kb on + strandat 198.752 kb on + strandat 198.753 kb on - strandat 198.753 kb on - strandat 199.062 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.074 kb on - strand, within Ac3H11_3640at 199.169 kb on + strand, within Ac3H11_3640at 199.169 kb on + strand, within Ac3H11_3640at 199.170 kb on - strand, within Ac3H11_3640at 199.260 kb on - strand, within Ac3H11_3640at 199.260 kb on - strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.280 kb on + strand, within Ac3H11_3640at 199.281 kb on - strand, within Ac3H11_3640at 199.320 kb on - strand, within Ac3H11_3640at 199.445 kb on + strand, within Ac3H11_3640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
196,805 - -0.8
196,805 - -0.0
196,806 + -0.1
196,806 + -0.2
196,806 + -0.2
196,806 + -0.2
196,806 + -0.3
196,807 - -0.2
196,807 - -1.9
196,807 - +0.5
196,807 - +0.3
196,807 - +1.5
196,807 - +0.5
197,090 + Ac3H11_3638 0.31 -1.1
197,090 + Ac3H11_3638 0.31 +0.7
197,090 + Ac3H11_3638 0.31 -0.3
197,090 + Ac3H11_3638 0.31 +0.3
197,090 + Ac3H11_3638 0.31 +0.0
197,091 - Ac3H11_3638 0.31 -0.4
197,091 - Ac3H11_3638 0.31 -0.4
197,091 - Ac3H11_3638 0.31 -1.7
197,091 - Ac3H11_3638 0.31 -0.1
197,091 - Ac3H11_3638 0.31 -0.6
197,165 + Ac3H11_3638 0.40 +0.8
197,165 + Ac3H11_3638 0.40 +0.1
197,165 + Ac3H11_3638 0.40 -0.5
197,165 + Ac3H11_3638 0.40 +0.6
197,165 + Ac3H11_3638 0.40 -0.8
197,165 + Ac3H11_3638 0.40 +1.2
197,166 - Ac3H11_3638 0.40 -0.1
197,166 - Ac3H11_3638 0.40 -1.2
197,166 - Ac3H11_3638 0.40 -0.8
197,609 + +0.8
197,609 + +0.2
197,609 + +0.1
197,610 - -0.4
197,610 - +0.6
197,614 - +0.2
197,715 + -0.1
197,715 + +0.5
197,715 + -0.6
197,715 + +1.4
197,715 + +0.3
197,716 - -1.1
197,716 - -0.3
197,716 - +0.6
197,716 - -0.8
197,719 + +0.6
197,720 - -0.7
197,720 - -0.4
197,720 - +0.1
197,720 - -0.1
197,720 - +0.7
197,720 - -0.5
197,720 - -0.7
197,880 + Ac3H11_3639 0.20 -0.7
197,880 + Ac3H11_3639 0.20 +1.5
197,880 + Ac3H11_3639 0.20 -1.4
197,906 + Ac3H11_3639 0.23 -0.1
197,906 + Ac3H11_3639 0.23 +0.2
197,906 + Ac3H11_3639 0.23 +0.4
197,906 + Ac3H11_3639 0.23 +0.5
197,906 + Ac3H11_3639 0.23 -1.4
197,907 - Ac3H11_3639 0.23 +0.8
197,907 - Ac3H11_3639 0.23 +0.2
197,907 - Ac3H11_3639 0.23 +0.8
197,907 - Ac3H11_3639 0.23 -0.1
197,938 - Ac3H11_3639 0.27 -0.0
197,938 - Ac3H11_3639 0.27 +0.1
198,072 + Ac3H11_3639 0.43 -0.5
198,096 + Ac3H11_3639 0.46 +0.0
198,097 - Ac3H11_3639 0.46 -0.0
198,097 - Ac3H11_3639 0.46 +0.8
198,138 + Ac3H11_3639 0.51 -1.2
198,138 + Ac3H11_3639 0.51 +0.3
198,139 - Ac3H11_3639 0.51 +0.2
198,534 + +0.0
198,534 + +0.1
198,534 + -1.0
198,534 + -0.2
198,534 + -0.7
198,534 + +0.9
198,534 + +0.2
198,534 + -0.0
198,534 + +0.9
198,534 + +0.6
198,535 - -1.1
198,581 + +0.8
198,752 + +0.6
198,753 - +0.0
198,753 - -0.6
199,062 - Ac3H11_3640 0.28 -0.1
199,074 - Ac3H11_3640 0.29 +0.1
199,074 - Ac3H11_3640 0.29 +0.3
199,074 - Ac3H11_3640 0.29 -0.2
199,169 + Ac3H11_3640 0.36 -0.7
199,169 + Ac3H11_3640 0.36 -0.1
199,170 - Ac3H11_3640 0.36 -0.6
199,260 - Ac3H11_3640 0.43 +0.1
199,260 - Ac3H11_3640 0.43 -0.1
199,280 + Ac3H11_3640 0.44 +0.6
199,280 + Ac3H11_3640 0.44 -0.5
199,280 + Ac3H11_3640 0.44 +1.6
199,281 - Ac3H11_3640 0.44 +0.3
199,320 - Ac3H11_3640 0.47 +0.4
199,445 + Ac3H11_3640 0.57 +0.4

Or see this region's nucleotide sequence