Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33835 and AZOBR_RS33840 are separated by 31 nucleotides AZOBR_RS33840 and AZOBR_RS33845 overlap by 11 nucleotides
AZOBR_RS33835: AZOBR_RS33835 - hypothetical protein, at 130,660 to 131,811
_RS33835
AZOBR_RS33840: AZOBR_RS33840 - hypothetical protein, at 131,843 to 132,091
_RS33840
AZOBR_RS33845: AZOBR_RS33845 - heptosyltransferase, at 132,081 to 133,145
_RS33845
Position (kb) 131
132
133 Strain fitness (log2 ratio) -1
0
1 at 130.859 kb on - strand, within AZOBR_RS33835 at 131.149 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.242 kb on + strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.243 kb on - strand, within AZOBR_RS33835 at 131.317 kb on + strand, within AZOBR_RS33835 at 131.411 kb on - strand, within AZOBR_RS33835 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.021 kb on + strand, within AZOBR_RS33840 at 132.022 kb on - strand, within AZOBR_RS33840 at 132.022 kb on - strand, within AZOBR_RS33840 at 132.160 kb on + strand at 132.160 kb on + strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.161 kb on - strand at 132.305 kb on - strand, within AZOBR_RS33845 at 132.748 kb on + strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.749 kb on - strand, within AZOBR_RS33845 at 132.769 kb on + strand, within AZOBR_RS33845 at 132.770 kb on - strand, within AZOBR_RS33845
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 130,859 - AZOBR_RS33835 0.17 -0.2 131,149 + AZOBR_RS33835 0.42 +0.3 131,242 + AZOBR_RS33835 0.51 +0.1 131,242 + AZOBR_RS33835 0.51 -1.7 131,242 + AZOBR_RS33835 0.51 -0.7 131,242 + AZOBR_RS33835 0.51 +0.1 131,242 + AZOBR_RS33835 0.51 +0.3 131,243 - AZOBR_RS33835 0.51 -0.3 131,243 - AZOBR_RS33835 0.51 -0.2 131,243 - AZOBR_RS33835 0.51 +0.1 131,243 - AZOBR_RS33835 0.51 -0.1 131,317 + AZOBR_RS33835 0.57 +1.0 131,411 - AZOBR_RS33835 0.65 +0.6 132,021 + AZOBR_RS33840 0.71 -1.0 132,021 + AZOBR_RS33840 0.71 -0.2 132,021 + AZOBR_RS33840 0.71 -0.4 132,021 + AZOBR_RS33840 0.71 -0.2 132,022 - AZOBR_RS33840 0.72 -0.5 132,022 - AZOBR_RS33840 0.72 -0.6 132,160 + -0.6 132,160 + +0.2 132,161 - -1.0 132,161 - +0.2 132,161 - -0.1 132,161 - -0.6 132,161 - +0.3 132,305 - AZOBR_RS33845 0.21 -0.1 132,748 + AZOBR_RS33845 0.63 +0.5 132,749 - AZOBR_RS33845 0.63 -0.3 132,749 - AZOBR_RS33845 0.63 +0.8 132,749 - AZOBR_RS33845 0.63 -0.2 132,769 + AZOBR_RS33845 0.65 +0.4 132,770 - AZOBR_RS33845 0.65 -0.1
Or see this region's nucleotide sequence