Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33820 and AZOBR_RS33825 are separated by 190 nucleotides AZOBR_RS33825 and AZOBR_RS33830 are separated by 514 nucleotides
AZOBR_RS33820: AZOBR_RS33820 - hypothetical protein, at 125,498 to 126,271
_RS33820
AZOBR_RS33825: AZOBR_RS33825 - hypothetical protein, at 126,462 to 127,604
_RS33825
AZOBR_RS33830: AZOBR_RS33830 - mannose-1-phosphate guanylyltransferase, at 128,119 to 129,564
_RS33830
Position (kb) 126
127
128 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.579 kb on + strand, within AZOBR_RS33820 at 125.580 kb on - strand, within AZOBR_RS33820 at 125.580 kb on - strand, within AZOBR_RS33820 at 125.633 kb on + strand, within AZOBR_RS33820 at 125.634 kb on - strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand, within AZOBR_RS33820 at 125.846 kb on + strand at 125.846 kb on + strand, within AZOBR_RS33820 at 125.847 kb on - strand, within AZOBR_RS33820 at 125.847 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 125.994 kb on - strand, within AZOBR_RS33820 at 126.239 kb on + strand at 126.239 kb on + strand at 126.350 kb on + strand at 127.119 kb on - strand, within AZOBR_RS33825 at 127.119 kb on - strand, within AZOBR_RS33825 at 127.129 kb on - strand, within AZOBR_RS33825 at 127.129 kb on - strand, within AZOBR_RS33825 at 127.246 kb on + strand at 127.246 kb on + strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.247 kb on - strand, within AZOBR_RS33825 at 127.416 kb on + strand, within AZOBR_RS33825 at 127.416 kb on + strand, within AZOBR_RS33825 at 127.666 kb on - strand at 127.824 kb on + strand at 128.042 kb on + strand at 128.042 kb on + strand at 128.043 kb on - strand at 128.073 kb on - strand at 128.124 kb on + strand at 128.602 kb on + strand, within AZOBR_RS33830 at 128.603 kb on - strand, within AZOBR_RS33830 at 128.603 kb on - strand, within AZOBR_RS33830
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 125,579 + AZOBR_RS33820 0.10 -1.6 125,579 + AZOBR_RS33820 0.10 -2.8 125,579 + AZOBR_RS33820 0.10 -3.0 125,579 + AZOBR_RS33820 0.10 -3.3 125,579 + AZOBR_RS33820 0.10 -4.0 125,580 - AZOBR_RS33820 0.11 -3.1 125,580 - AZOBR_RS33820 0.11 -0.3 125,633 + AZOBR_RS33820 0.17 -1.1 125,634 - AZOBR_RS33820 0.18 -0.1 125,846 + AZOBR_RS33820 0.45 -3.5 125,846 + AZOBR_RS33820 0.45 -4.1 125,846 + AZOBR_RS33820 0.45 -2.4 125,846 + -0.1 125,846 + AZOBR_RS33820 0.45 -2.4 125,847 - AZOBR_RS33820 0.45 -2.0 125,847 - AZOBR_RS33820 0.45 -2.6 125,994 - AZOBR_RS33820 0.64 -2.0 125,994 - AZOBR_RS33820 0.64 -3.0 125,994 - AZOBR_RS33820 0.64 -3.3 126,239 + -2.2 126,239 + -0.5 126,350 + -0.0 127,119 - AZOBR_RS33825 0.57 -2.4 127,119 - AZOBR_RS33825 0.57 -3.4 127,129 - AZOBR_RS33825 0.58 -2.3 127,129 - AZOBR_RS33825 0.58 -3.0 127,246 + +1.1 127,246 + AZOBR_RS33825 0.69 -2.7 127,247 - AZOBR_RS33825 0.69 -1.8 127,247 - AZOBR_RS33825 0.69 -1.4 127,247 - AZOBR_RS33825 0.69 -2.6 127,416 + AZOBR_RS33825 0.83 -2.3 127,416 + AZOBR_RS33825 0.83 -3.9 127,666 - -2.0 127,824 + -0.4 128,042 + +0.1 128,042 + +0.4 128,043 - -2.1 128,073 - -1.0 128,124 + -0.5 128,602 + AZOBR_RS33830 0.33 -1.0 128,603 - AZOBR_RS33830 0.33 -3.6 128,603 - AZOBR_RS33830 0.33 -2.9
Or see this region's nucleotide sequence