Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS26610 and AZOBR_RS26615 are separated by 20 nucleotides AZOBR_RS26615 and AZOBR_RS26620 are separated by 244 nucleotides AZOBR_RS26620 and AZOBR_RS26625 are separated by 119 nucleotides
AZOBR_RS26610: AZOBR_RS26610 - iron dicitrate transport regulator FecR, at 115,231 to 116,274
_RS26610
AZOBR_RS26615: AZOBR_RS26615 - RNA polymerase, at 116,295 to 116,888
_RS26615
AZOBR_RS26620: AZOBR_RS26620 - putative transcriptional regulator GntR family, at 117,133 to 117,807
_RS26620
AZOBR_RS26625: AZOBR_RS26625 - dehydroascorbate transporter, at 117,927 to 119,210
_RS26625
Position (kb) 117
118 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 116.313 kb on + strand at 116.313 kb on + strand at 116.313 kb on + strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.314 kb on - strand at 116.764 kb on + strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 116.765 kb on - strand, within AZOBR_RS26615 at 117.134 kb on + strand at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.458 kb on + strand, within AZOBR_RS26620 at 117.459 kb on - strand, within AZOBR_RS26620 at 117.605 kb on + strand, within AZOBR_RS26620 at 117.686 kb on + strand, within AZOBR_RS26620 at 117.867 kb on + strand at 117.867 kb on + strand at 118.144 kb on + strand, within AZOBR_RS26625 at 118.417 kb on + strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.472 kb on - strand, within AZOBR_RS26625 at 118.735 kb on + strand, within AZOBR_RS26625 at 118.736 kb on - strand, within AZOBR_RS26625
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 116,313 + +0.1 116,313 + +1.1 116,313 + -0.0 116,314 - +0.2 116,314 - +0.5 116,314 - +0.0 116,764 + AZOBR_RS26615 0.79 +1.1 116,765 - AZOBR_RS26615 0.79 -0.4 116,765 - AZOBR_RS26615 0.79 -0.2 116,765 - AZOBR_RS26615 0.79 -0.1 117,134 + -0.6 117,458 + AZOBR_RS26620 0.48 -2.2 117,458 + AZOBR_RS26620 0.48 -1.4 117,458 + AZOBR_RS26620 0.48 -2.0 117,459 - AZOBR_RS26620 0.48 -1.1 117,605 + AZOBR_RS26620 0.70 -1.5 117,686 + AZOBR_RS26620 0.82 -3.6 117,867 + -0.7 117,867 + +0.4 118,144 + AZOBR_RS26625 0.17 -0.2 118,417 + AZOBR_RS26625 0.38 +0.0 118,472 - AZOBR_RS26625 0.42 +0.1 118,472 - AZOBR_RS26625 0.42 -0.7 118,735 + AZOBR_RS26625 0.63 -0.5 118,736 - AZOBR_RS26625 0.63 +1.9
Or see this region's nucleotide sequence