Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS26380

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS26375 and AZOBR_RS26380 are separated by 244 nucleotidesAZOBR_RS26380 and AZOBR_RS26385 are separated by 258 nucleotides AZOBR_RS26375: AZOBR_RS26375 - hypothetical protein, at 64,071 to 64,952 _RS26375 AZOBR_RS26380: AZOBR_RS26380 - GntR family transcriptional regulator, at 65,197 to 65,904 _RS26380 AZOBR_RS26385: AZOBR_RS26385 - transcriptional regulator, at 66,163 to 67,272 _RS26385 Position (kb) 65 66Strain fitness (log2 ratio) -2 -1 0 1at 64.311 kb on + strand, within AZOBR_RS26375at 64.407 kb on - strand, within AZOBR_RS26375at 64.454 kb on - strand, within AZOBR_RS26375at 64.454 kb on - strand, within AZOBR_RS26375at 64.471 kb on + strand, within AZOBR_RS26375at 64.702 kb on + strand, within AZOBR_RS26375at 64.702 kb on + strand, within AZOBR_RS26375at 64.819 kb on + strand, within AZOBR_RS26375at 65.704 kb on + strand, within AZOBR_RS26380at 65.704 kb on + strand, within AZOBR_RS26380at 65.789 kb on - strand, within AZOBR_RS26380at 66.846 kb on - strand, within AZOBR_RS26385at 66.851 kb on + strand, within AZOBR_RS26385

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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64,311 + AZOBR_RS26375 0.27 +0.2
64,407 - AZOBR_RS26375 0.38 -0.0
64,454 - AZOBR_RS26375 0.43 +0.3
64,454 - AZOBR_RS26375 0.43 +0.1
64,471 + AZOBR_RS26375 0.45 -0.1
64,702 + AZOBR_RS26375 0.72 +0.7
64,702 + AZOBR_RS26375 0.72 +0.5
64,819 + AZOBR_RS26375 0.85 +0.1
65,704 + AZOBR_RS26380 0.72 -2.7
65,704 + AZOBR_RS26380 0.72 +0.2
65,789 - AZOBR_RS26380 0.84 -2.3
66,846 - AZOBR_RS26385 0.62 -0.2
66,851 + AZOBR_RS26385 0.62 -1.4

Or see this region's nucleotide sequence