Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23950 and AZOBR_RS23955 are separated by 411 nucleotides AZOBR_RS23955 and AZOBR_RS23960 are separated by 10 nucleotides
AZOBR_RS23950: AZOBR_RS23950 - hypothetical protein, at 403,663 to 404,316
_RS23950
AZOBR_RS23955: AZOBR_RS23955 - potassium transporter TrkH, at 404,728 to 404,817
_RS23955
AZOBR_RS23960: AZOBR_RS23960 - ATPase, at 404,828 to 406,537
_RS23960
Position (kb) 403
404
405 Strain fitness (log2 ratio) -1
0
1 at 402.922 kb on + strand at 402.923 kb on - strand at 402.923 kb on - strand at 403.817 kb on - strand, within AZOBR_RS23950 at 403.817 kb on - strand, within AZOBR_RS23950 at 403.817 kb on - strand, within AZOBR_RS23950 at 403.817 kb on - strand, within AZOBR_RS23950 at 403.834 kb on + strand, within AZOBR_RS23950 at 403.876 kb on + strand, within AZOBR_RS23950 at 403.876 kb on + strand, within AZOBR_RS23950 at 403.876 kb on + strand, within AZOBR_RS23950 at 403.877 kb on - strand, within AZOBR_RS23950 at 403.877 kb on - strand, within AZOBR_RS23950 at 403.877 kb on - strand, within AZOBR_RS23950 at 404.134 kb on + strand, within AZOBR_RS23950 at 404.134 kb on + strand, within AZOBR_RS23950 at 404.135 kb on - strand, within AZOBR_RS23950 at 404.464 kb on + strand at 404.464 kb on + strand at 404.465 kb on - strand at 404.469 kb on + strand at 404.470 kb on - strand at 404.482 kb on + strand at 404.482 kb on + strand at 404.493 kb on + strand at 404.493 kb on + strand at 404.493 kb on + strand at 404.494 kb on - strand at 404.496 kb on - strand at 404.527 kb on + strand at 404.529 kb on + strand at 404.529 kb on + strand at 404.530 kb on - strand at 404.688 kb on + strand at 404.688 kb on + strand at 404.688 kb on + strand at 404.688 kb on + strand at 404.689 kb on - strand at 404.740 kb on + strand, within AZOBR_RS23955 at 404.740 kb on + strand, within AZOBR_RS23955 at 404.903 kb on + strand at 404.904 kb on - strand at 404.904 kb on - strand at 404.905 kb on + strand at 404.905 kb on + strand at 404.905 kb on + strand at 404.905 kb on + strand at 404.906 kb on - strand at 404.906 kb on - strand at 404.906 kb on - strand at 404.975 kb on + strand at 405.023 kb on + strand, within AZOBR_RS23960 at 405.024 kb on - strand, within AZOBR_RS23960 at 405.024 kb on - strand, within AZOBR_RS23960 at 405.071 kb on + strand, within AZOBR_RS23960 at 405.071 kb on + strand, within AZOBR_RS23960 at 405.071 kb on + strand, within AZOBR_RS23960
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 402,922 + +1.1 402,923 - -1.2 402,923 - +0.5 403,817 - AZOBR_RS23950 0.24 -0.0 403,817 - AZOBR_RS23950 0.24 +0.6 403,817 - AZOBR_RS23950 0.24 +0.7 403,817 - AZOBR_RS23950 0.24 -0.4 403,834 + AZOBR_RS23950 0.26 -0.0 403,876 + AZOBR_RS23950 0.33 -0.1 403,876 + AZOBR_RS23950 0.33 +0.2 403,876 + AZOBR_RS23950 0.33 -0.0 403,877 - AZOBR_RS23950 0.33 +0.9 403,877 - AZOBR_RS23950 0.33 +0.1 403,877 - AZOBR_RS23950 0.33 +0.1 404,134 + AZOBR_RS23950 0.72 -0.9 404,134 + AZOBR_RS23950 0.72 -1.4 404,135 - AZOBR_RS23950 0.72 -1.1 404,464 + -0.0 404,464 + +0.7 404,465 - -0.1 404,469 + -0.0 404,470 - +1.2 404,482 + +0.1 404,482 + -0.0 404,493 + -0.1 404,493 + +0.3 404,493 + -0.2 404,494 - +0.3 404,496 - -0.2 404,527 + -0.7 404,529 + -0.7 404,529 + -0.0 404,530 - -0.6 404,688 + -0.5 404,688 + -0.0 404,688 + -0.1 404,688 + -0.7 404,689 - -0.3 404,740 + AZOBR_RS23955 0.13 -0.2 404,740 + AZOBR_RS23955 0.13 -0.0 404,903 + -1.1 404,904 - -0.4 404,904 - -0.3 404,905 + +0.5 404,905 + -0.6 404,905 + +0.5 404,905 + +0.5 404,906 - +0.5 404,906 - +0.0 404,906 - -0.1 404,975 + -0.6 405,023 + AZOBR_RS23960 0.11 +1.0 405,024 - AZOBR_RS23960 0.11 +0.1 405,024 - AZOBR_RS23960 0.11 -0.8 405,071 + AZOBR_RS23960 0.14 +0.1 405,071 + AZOBR_RS23960 0.14 -0.1 405,071 + AZOBR_RS23960 0.14 -0.2
Or see this region's nucleotide sequence