Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23880 and AZOBR_RS23885 are separated by 274 nucleotides AZOBR_RS23885 and AZOBR_RS23890 are separated by 8 nucleotides
AZOBR_RS23880: AZOBR_RS23880 - hydrolase, at 388,874 to 389,503
_RS23880
AZOBR_RS23885: AZOBR_RS23885 - multidrug ABC transporter ATP-binding protein, at 389,778 to 390,704
_RS23885
AZOBR_RS23890: AZOBR_RS23890 - sugar ABC transporter permease, at 390,713 to 391,474
_RS23890
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 388.784 kb on + strand at 388.784 kb on + strand at 388.785 kb on - strand at 388.785 kb on - strand at 388.790 kb on + strand at 388.791 kb on - strand at 388.791 kb on - strand at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.582 kb on + strand at 389.582 kb on + strand at 389.583 kb on - strand at 389.583 kb on - strand at 389.585 kb on + strand at 389.586 kb on - strand at 389.729 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.818 kb on - strand at 390.354 kb on + strand, within AZOBR_RS23885 at 390.354 kb on + strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.558 kb on + strand, within AZOBR_RS23885 at 390.559 kb on - strand, within AZOBR_RS23885 at 390.740 kb on + strand at 390.740 kb on + strand at 390.740 kb on + strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.741 kb on - strand at 390.875 kb on + strand, within AZOBR_RS23890 at 390.875 kb on + strand, within AZOBR_RS23890 at 390.875 kb on + strand, within AZOBR_RS23890 at 390.876 kb on - strand, within AZOBR_RS23890 at 390.876 kb on - strand, within AZOBR_RS23890 at 390.953 kb on + strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.954 kb on - strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.980 kb on + strand, within AZOBR_RS23890 at 390.981 kb on - strand, within AZOBR_RS23890 at 391.028 kb on + strand, within AZOBR_RS23890 at 391.268 kb on + strand, within AZOBR_RS23890 at 391.328 kb on + strand, within AZOBR_RS23890 at 391.328 kb on + strand, within AZOBR_RS23890 at 391.329 kb on - strand, within AZOBR_RS23890 at 391.329 kb on - strand, within AZOBR_RS23890 at 391.358 kb on + strand, within AZOBR_RS23890 at 391.358 kb on + strand, within AZOBR_RS23890 at 391.457 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 388,784 + +0.8 388,784 + -0.3 388,785 - +0.2 388,785 - +0.1 388,790 + -0.2 388,791 - -2.1 388,791 - -0.3 389,193 + AZOBR_RS23880 0.51 -0.2 389,193 + AZOBR_RS23880 0.51 +0.5 389,193 + AZOBR_RS23880 0.51 +0.2 389,194 - AZOBR_RS23880 0.51 -0.3 389,194 - AZOBR_RS23880 0.51 +0.2 389,582 + +0.6 389,582 + +0.2 389,583 - +0.1 389,583 - +1.2 389,585 + -0.1 389,586 - +0.1 389,729 + -0.1 389,817 + +1.1 389,817 + +0.3 389,817 + -1.5 389,818 - +0.2 390,354 + AZOBR_RS23885 0.62 +0.3 390,354 + AZOBR_RS23885 0.62 -1.9 390,355 - AZOBR_RS23885 0.62 +0.6 390,355 - AZOBR_RS23885 0.62 +1.5 390,355 - AZOBR_RS23885 0.62 +0.2 390,355 - AZOBR_RS23885 0.62 +0.2 390,558 + AZOBR_RS23885 0.84 +0.5 390,559 - AZOBR_RS23885 0.84 +0.3 390,740 + +0.3 390,740 + +0.4 390,740 + -0.5 390,741 - -0.1 390,741 - -1.4 390,741 - -0.0 390,741 - +0.4 390,875 + AZOBR_RS23890 0.21 +1.0 390,875 + AZOBR_RS23890 0.21 -0.2 390,875 + AZOBR_RS23890 0.21 +0.7 390,876 - AZOBR_RS23890 0.21 +0.1 390,876 - AZOBR_RS23890 0.21 +0.3 390,953 + AZOBR_RS23890 0.31 +0.9 390,954 - AZOBR_RS23890 0.32 +0.1 390,954 - AZOBR_RS23890 0.32 -0.6 390,954 - AZOBR_RS23890 0.32 -0.1 390,954 - AZOBR_RS23890 0.32 +0.7 390,954 - AZOBR_RS23890 0.32 +0.8 390,954 - AZOBR_RS23890 0.32 +0.4 390,980 + AZOBR_RS23890 0.35 +0.6 390,980 + AZOBR_RS23890 0.35 -0.2 390,980 + AZOBR_RS23890 0.35 -0.0 390,981 - AZOBR_RS23890 0.35 +0.9 391,028 + AZOBR_RS23890 0.41 +0.4 391,268 + AZOBR_RS23890 0.73 -0.2 391,328 + AZOBR_RS23890 0.81 +2.3 391,328 + AZOBR_RS23890 0.81 -0.1 391,329 - AZOBR_RS23890 0.81 +0.2 391,329 - AZOBR_RS23890 0.81 +0.1 391,358 + AZOBR_RS23890 0.85 -1.3 391,358 + AZOBR_RS23890 0.85 -1.4 391,457 + +0.1
Or see this region's nucleotide sequence