Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21315
Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Vancomycin 0.03 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,562,358 | + | AZOBR_RS21310 | 0.28 | -0.3 | |
1,562,781 | + | AZOBR_RS21310 | 0.60 | +0.5 | |
1,562,781 | + | AZOBR_RS21310 | 0.60 | +0.2 | |
1,562,781 | + | AZOBR_RS21310 | 0.60 | +0.8 | |
1,562,781 | + | AZOBR_RS21310 | 0.60 | +0.8 | |
1,562,782 | - | AZOBR_RS21310 | 0.60 | +2.3 | |
1,562,782 | - | AZOBR_RS21310 | 0.60 | -0.1 | |
1,562,782 | - | AZOBR_RS21310 | 0.60 | +0.4 | |
1,563,225 | + | +0.2 | |||
1,563,674 | + | AZOBR_RS21315 | 0.39 | +0.2 | |
1,563,675 | - | AZOBR_RS21315 | 0.39 | -0.3 | |
1,563,863 | + | AZOBR_RS21315 | 0.60 | +0.4 | |
1,563,863 | + | AZOBR_RS21315 | 0.60 | +0.4 | |
1,564,029 | - | AZOBR_RS21315 | 0.79 | +1.3 | |
1,564,034 | + | AZOBR_RS21315 | 0.80 | +1.1 | |
1,564,533 | - | AZOBR_RS21320 | 0.66 | -0.5 | |
1,564,882 | + | +0.8 | |||
1,564,883 | - | -0.1 | |||
1,564,883 | - | +1.1 | |||
1,564,984 | + | +0.5 | |||
1,564,984 | + | -0.0 | |||
1,564,985 | - | -0.0 | |||
1,564,985 | - | +0.4 | |||
1,565,203 | + | AZOBR_RS21325 | 0.11 | +0.4 | |
1,565,204 | - | AZOBR_RS21325 | 0.11 | -0.1 |
Or see this region's nucleotide sequence