Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21030

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS21025 and AZOBR_RS21030 are separated by 115 nucleotidesAZOBR_RS21030 and AZOBR_RS21035 are separated by 103 nucleotides AZOBR_RS21025: AZOBR_RS21025 - beta-lactamase, at 1,476,257 to 1,477,447 _RS21025 AZOBR_RS21030: AZOBR_RS21030 - MFS transporter, at 1,477,563 to 1,478,774 _RS21030 AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422 _RS21035 Position (kb) 1477 1478 1479Strain fitness (log2 ratio) -1 0 1at 1476.683 kb on + strand, within AZOBR_RS21025at 1476.684 kb on - strand, within AZOBR_RS21025at 1476.684 kb on - strand, within AZOBR_RS21025at 1476.684 kb on - strand, within AZOBR_RS21025at 1476.774 kb on - strand, within AZOBR_RS21025at 1476.947 kb on + strand, within AZOBR_RS21025at 1476.948 kb on - strand, within AZOBR_RS21025at 1476.948 kb on - strand, within AZOBR_RS21025at 1477.028 kb on + strand, within AZOBR_RS21025at 1477.029 kb on - strand, within AZOBR_RS21025at 1477.029 kb on - strand, within AZOBR_RS21025at 1477.376 kb on + strandat 1477.376 kb on + strandat 1477.377 kb on - strandat 1477.377 kb on - strandat 1477.377 kb on - strandat 1477.728 kb on + strand, within AZOBR_RS21030at 1477.860 kb on + strand, within AZOBR_RS21030at 1477.861 kb on - strand, within AZOBR_RS21030at 1478.244 kb on + strand, within AZOBR_RS21030at 1478.244 kb on + strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.245 kb on - strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.250 kb on + strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1478.251 kb on - strand, within AZOBR_RS21030at 1479.197 kb on + strand, within AZOBR_RS21035at 1479.198 kb on - strand, within AZOBR_RS21035at 1479.248 kb on + strand, within AZOBR_RS21035at 1479.248 kb on + strand, within AZOBR_RS21035at 1479.249 kb on - strand, within AZOBR_RS21035at 1479.249 kb on - strand, within AZOBR_RS21035at 1479.371 kb on + strand, within AZOBR_RS21035at 1479.372 kb on - strand, within AZOBR_RS21035at 1479.372 kb on - strand, within AZOBR_RS21035

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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1,476,683 + AZOBR_RS21025 0.36 +1.3
1,476,684 - AZOBR_RS21025 0.36 -0.8
1,476,684 - AZOBR_RS21025 0.36 +0.0
1,476,684 - AZOBR_RS21025 0.36 -0.3
1,476,774 - AZOBR_RS21025 0.43 -0.7
1,476,947 + AZOBR_RS21025 0.58 -1.0
1,476,948 - AZOBR_RS21025 0.58 +0.8
1,476,948 - AZOBR_RS21025 0.58 +0.1
1,477,028 + AZOBR_RS21025 0.65 -0.1
1,477,029 - AZOBR_RS21025 0.65 +0.4
1,477,029 - AZOBR_RS21025 0.65 +0.1
1,477,376 + +0.6
1,477,376 + -0.2
1,477,377 - -1.3
1,477,377 - -1.5
1,477,377 - -0.1
1,477,728 + AZOBR_RS21030 0.14 +0.1
1,477,860 + AZOBR_RS21030 0.25 -0.3
1,477,861 - AZOBR_RS21030 0.25 +0.2
1,478,244 + AZOBR_RS21030 0.56 -0.5
1,478,244 + AZOBR_RS21030 0.56 -0.4
1,478,245 - AZOBR_RS21030 0.56 +1.2
1,478,245 - AZOBR_RS21030 0.56 +0.4
1,478,245 - AZOBR_RS21030 0.56 +0.9
1,478,250 + AZOBR_RS21030 0.57 +0.0
1,478,250 + AZOBR_RS21030 0.57 +0.1
1,478,250 + AZOBR_RS21030 0.57 +1.4
1,478,250 + AZOBR_RS21030 0.57 +0.7
1,478,251 - AZOBR_RS21030 0.57 +1.4
1,478,251 - AZOBR_RS21030 0.57 -0.4
1,478,251 - AZOBR_RS21030 0.57 -0.5
1,478,251 - AZOBR_RS21030 0.57 +0.4
1,479,197 + AZOBR_RS21035 0.21 -0.2
1,479,198 - AZOBR_RS21035 0.21 +0.3
1,479,248 + AZOBR_RS21035 0.24 +0.5
1,479,248 + AZOBR_RS21035 0.24 +0.1
1,479,249 - AZOBR_RS21035 0.24 -0.2
1,479,249 - AZOBR_RS21035 0.24 +0.2
1,479,371 + AZOBR_RS21035 0.32 -0.4
1,479,372 - AZOBR_RS21035 0.32 +0.8
1,479,372 - AZOBR_RS21035 0.32 +0.1

Or see this region's nucleotide sequence