Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16450

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16440 and AZOBR_RS16445 are separated by 86 nucleotidesAZOBR_RS16445 and AZOBR_RS16450 are separated by 82 nucleotidesAZOBR_RS16450 and AZOBR_RS16455 are separated by 20 nucleotidesAZOBR_RS16455 and AZOBR_RS16460 are separated by 89 nucleotides AZOBR_RS16440: AZOBR_RS16440 - hypothetical protein, at 438,077 to 439,282 _RS16440 AZOBR_RS16445: AZOBR_RS16445 - chemotaxis protein CheY, at 439,369 to 440,067 _RS16445 AZOBR_RS16450: AZOBR_RS16450 - ATPase, at 440,150 to 441,478 _RS16450 AZOBR_RS16455: AZOBR_RS16455 - hypothetical protein, at 441,499 to 441,831 _RS16455 AZOBR_RS16460: AZOBR_RS16460 - FAD-dependent oxidoreductase, at 441,921 to 443,099 _RS16460 Position (kb) 440 441 442Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 440.105 kb on - strandat 440.639 kb on + strand, within AZOBR_RS16450at 441.012 kb on - strand, within AZOBR_RS16450at 441.012 kb on - strand, within AZOBR_RS16450at 441.559 kb on + strand, within AZOBR_RS16455at 441.559 kb on + strand, within AZOBR_RS16455at 441.560 kb on - strand, within AZOBR_RS16455at 441.560 kb on - strand, within AZOBR_RS16455at 441.616 kb on + strand, within AZOBR_RS16455at 441.616 kb on + strand, within AZOBR_RS16455at 441.904 kb on + strandat 442.210 kb on - strand, within AZOBR_RS16460at 442.215 kb on + strand, within AZOBR_RS16460at 442.395 kb on + strand, within AZOBR_RS16460

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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440,105 - -0.3
440,639 + AZOBR_RS16450 0.37 -4.0
441,012 - AZOBR_RS16450 0.65 -4.3
441,012 - AZOBR_RS16450 0.65 -2.4
441,559 + AZOBR_RS16455 0.18 +0.3
441,559 + AZOBR_RS16455 0.18 +0.7
441,560 - AZOBR_RS16455 0.18 -0.0
441,560 - AZOBR_RS16455 0.18 -0.2
441,616 + AZOBR_RS16455 0.35 +0.1
441,616 + AZOBR_RS16455 0.35 +0.1
441,904 + +0.3
442,210 - AZOBR_RS16460 0.25 -0.1
442,215 + AZOBR_RS16460 0.25 +0.2
442,395 + AZOBR_RS16460 0.40 +1.0

Or see this region's nucleotide sequence