Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS15065

Experiment: Vancomycin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS15055 and AZOBR_RS15060 overlap by 4 nucleotidesAZOBR_RS15060 and AZOBR_RS15065 are separated by 82 nucleotides AZOBR_RS15055: AZOBR_RS15055 - muraminidase, at 150,914 to 151,360 _RS15055 AZOBR_RS15060: AZOBR_RS15060 - hypothetical protein, at 151,357 to 151,536 _RS15060 AZOBR_RS15065: AZOBR_RS15065 - hypothetical protein, at 151,619 to 154,144 _RS15065 Position (kb) 151 152 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 151.302 kb on + strand, within AZOBR_RS15055at 151.302 kb on + strand, within AZOBR_RS15055at 151.541 kb on + strandat 151.541 kb on + strandat 151.541 kb on + strandat 151.541 kb on + strandat 151.541 kb on + strandat 151.541 kb on + strandat 151.542 kb on - strandat 151.542 kb on - strandat 151.542 kb on - strandat 151.542 kb on - strandat 151.542 kb on - strandat 151.716 kb on + strandat 151.717 kb on - strandat 151.746 kb on + strandat 151.747 kb on - strandat 152.027 kb on + strand, within AZOBR_RS15065at 152.028 kb on - strand, within AZOBR_RS15065at 152.083 kb on - strand, within AZOBR_RS15065at 152.130 kb on - strand, within AZOBR_RS15065at 152.437 kb on - strand, within AZOBR_RS15065at 152.462 kb on - strand, within AZOBR_RS15065at 152.511 kb on + strand, within AZOBR_RS15065at 152.511 kb on + strand, within AZOBR_RS15065at 152.512 kb on - strand, within AZOBR_RS15065at 152.573 kb on - strand, within AZOBR_RS15065at 152.574 kb on + strand, within AZOBR_RS15065at 152.574 kb on + strand, within AZOBR_RS15065at 152.574 kb on + strand, within AZOBR_RS15065at 152.574 kb on + strand, within AZOBR_RS15065at 152.700 kb on + strand, within AZOBR_RS15065at 152.700 kb on + strand, within AZOBR_RS15065at 152.700 kb on + strand, within AZOBR_RS15065at 152.701 kb on - strand, within AZOBR_RS15065at 152.701 kb on - strand, within AZOBR_RS15065at 152.749 kb on - strand, within AZOBR_RS15065at 152.749 kb on - strand, within AZOBR_RS15065at 152.764 kb on + strand, within AZOBR_RS15065at 152.772 kb on + strand, within AZOBR_RS15065at 152.805 kb on + strand, within AZOBR_RS15065at 152.806 kb on - strand, within AZOBR_RS15065at 152.856 kb on + strand, within AZOBR_RS15065at 152.856 kb on + strand, within AZOBR_RS15065at 152.856 kb on + strand, within AZOBR_RS15065at 152.857 kb on - strand, within AZOBR_RS15065at 152.857 kb on - strand, within AZOBR_RS15065at 152.857 kb on - strand, within AZOBR_RS15065at 152.975 kb on - strand, within AZOBR_RS15065at 152.975 kb on - strand, within AZOBR_RS15065at 153.360 kb on + strand, within AZOBR_RS15065at 153.361 kb on - strand, within AZOBR_RS15065at 153.361 kb on - strand, within AZOBR_RS15065at 153.363 kb on + strand, within AZOBR_RS15065at 153.363 kb on + strand, within AZOBR_RS15065at 153.363 kb on + strand, within AZOBR_RS15065at 153.364 kb on - strand, within AZOBR_RS15065at 153.364 kb on - strand, within AZOBR_RS15065at 153.570 kb on + strand, within AZOBR_RS15065at 153.571 kb on - strand, within AZOBR_RS15065at 153.571 kb on - strand, within AZOBR_RS15065at 153.615 kb on - strand, within AZOBR_RS15065at 153.615 kb on - strand, within AZOBR_RS15065at 154.101 kb on + strandat 154.101 kb on + strandat 154.102 kb on - strandat 154.210 kb on + strandat 154.215 kb on - strandat 154.296 kb on + strandat 154.346 kb on - strandat 154.346 kb on - strandat 154.393 kb on + strandat 155.032 kb on - strandat 155.042 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
remove
151,302 + AZOBR_RS15055 0.87 +1.0
151,302 + AZOBR_RS15055 0.87 +0.9
151,541 + +0.7
151,541 + +0.8
151,541 + +0.6
151,541 + +0.8
151,541 + +0.6
151,541 + -0.5
151,542 - +0.7
151,542 - +0.1
151,542 - -0.3
151,542 - +0.6
151,542 - +0.3
151,716 + +0.9
151,717 - +0.6
151,746 + +0.3
151,747 - +0.5
152,027 + AZOBR_RS15065 0.16 +1.0
152,028 - AZOBR_RS15065 0.16 +0.1
152,083 - AZOBR_RS15065 0.18 -0.1
152,130 - AZOBR_RS15065 0.20 +1.0
152,437 - AZOBR_RS15065 0.32 +0.6
152,462 - AZOBR_RS15065 0.33 -2.3
152,511 + AZOBR_RS15065 0.35 +0.6
152,511 + AZOBR_RS15065 0.35 +0.3
152,512 - AZOBR_RS15065 0.35 +0.1
152,573 - AZOBR_RS15065 0.38 +0.4
152,574 + AZOBR_RS15065 0.38 +0.8
152,574 + AZOBR_RS15065 0.38 +0.6
152,574 + AZOBR_RS15065 0.38 +0.8
152,574 + AZOBR_RS15065 0.38 +1.2
152,700 + AZOBR_RS15065 0.43 +0.2
152,700 + AZOBR_RS15065 0.43 +0.3
152,700 + AZOBR_RS15065 0.43 +0.6
152,701 - AZOBR_RS15065 0.43 +0.8
152,701 - AZOBR_RS15065 0.43 +1.1
152,749 - AZOBR_RS15065 0.45 +1.8
152,749 - AZOBR_RS15065 0.45 +0.7
152,764 + AZOBR_RS15065 0.45 +1.1
152,772 + AZOBR_RS15065 0.46 +0.7
152,805 + AZOBR_RS15065 0.47 +0.1
152,806 - AZOBR_RS15065 0.47 +1.1
152,856 + AZOBR_RS15065 0.49 +0.4
152,856 + AZOBR_RS15065 0.49 +0.5
152,856 + AZOBR_RS15065 0.49 +2.0
152,857 - AZOBR_RS15065 0.49 -0.6
152,857 - AZOBR_RS15065 0.49 +0.8
152,857 - AZOBR_RS15065 0.49 +0.8
152,975 - AZOBR_RS15065 0.54 +1.8
152,975 - AZOBR_RS15065 0.54 -1.2
153,360 + AZOBR_RS15065 0.69 +0.3
153,361 - AZOBR_RS15065 0.69 +0.9
153,361 - AZOBR_RS15065 0.69 +1.5
153,363 + AZOBR_RS15065 0.69 +1.0
153,363 + AZOBR_RS15065 0.69 +0.3
153,363 + AZOBR_RS15065 0.69 +0.9
153,364 - AZOBR_RS15065 0.69 +0.2
153,364 - AZOBR_RS15065 0.69 +0.5
153,570 + AZOBR_RS15065 0.77 +1.0
153,571 - AZOBR_RS15065 0.77 +0.9
153,571 - AZOBR_RS15065 0.77 +0.1
153,615 - AZOBR_RS15065 0.79 +0.4
153,615 - AZOBR_RS15065 0.79 +0.8
154,101 + -1.2
154,101 + +0.0
154,102 - -0.4
154,210 + +0.7
154,215 - +0.1
154,296 + +0.1
154,346 - +1.3
154,346 - +0.9
154,393 + +0.9
155,032 - +0.9
155,042 - +0.0

Or see this region's nucleotide sequence