Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09035

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09030 and AZOBR_RS09035 are separated by 200 nucleotidesAZOBR_RS09035 and AZOBR_RS09040 are separated by 80 nucleotides AZOBR_RS09030: AZOBR_RS09030 - metallophosphoesterase, at 1,887,630 to 1,888,451 _RS09030 AZOBR_RS09035: AZOBR_RS09035 - transcriptional regulator, at 1,888,652 to 1,889,404 _RS09035 AZOBR_RS09040: AZOBR_RS09040 - crossover junction endodeoxyribonuclease, at 1,889,485 to 1,889,946 _RS09040 Position (kb) 1888 1889 1890Strain fitness (log2 ratio) -3 -2 -1 0 1at 1887.900 kb on + strand, within AZOBR_RS09030at 1888.357 kb on - strand, within AZOBR_RS09030at 1888.519 kb on + strandat 1888.519 kb on + strandat 1888.519 kb on + strandat 1888.527 kb on + strandat 1888.576 kb on + strandat 1888.576 kb on + strandat 1889.012 kb on + strand, within AZOBR_RS09035at 1889.075 kb on + strand, within AZOBR_RS09035at 1890.039 kb on + strandat 1890.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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1,887,900 + AZOBR_RS09030 0.33 -3.5
1,888,357 - AZOBR_RS09030 0.88 -3.5
1,888,519 + -0.7
1,888,519 + -0.7
1,888,519 + -0.1
1,888,527 + -1.3
1,888,576 + -1.9
1,888,576 + -0.5
1,889,012 + AZOBR_RS09035 0.48 -2.4
1,889,075 + AZOBR_RS09035 0.56 -1.4
1,890,039 + -1.0
1,890,191 + -0.3

Or see this region's nucleotide sequence