Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09015 and AZOBR_RS09020 are separated by 3 nucleotides AZOBR_RS09020 and AZOBR_RS00030 are separated by 13 nucleotides AZOBR_RS00030 and AZOBR_RS09025 are separated by 39 nucleotides AZOBR_RS09025 and AZOBR_RS09030 are separated by 12 nucleotides
AZOBR_RS09015: AZOBR_RS09015 - hypothetical protein, at 1,886,254 to 1,886,478
_RS09015
AZOBR_RS09020: AZOBR_RS09020 - hypothetical protein, at 1,886,482 to 1,886,796
_RS09020
AZOBR_RS00030: AZOBR_RS00030 - 6S, at 1,886,810 to 1,886,969
_RS00030
AZOBR_RS09025: AZOBR_RS09025 - 5-formyltetrahydrofolate cyclo-ligase, at 1,887,009 to 1,887,617
_RS09025
AZOBR_RS09030: AZOBR_RS09030 - metallophosphoesterase, at 1,887,630 to 1,888,451
_RS09030
Position (kb) 1887
1888 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1886.142 kb on + strand at 1886.143 kb on - strand at 1886.195 kb on + strand at 1886.196 kb on - strand at 1886.800 kb on - strand at 1886.800 kb on - strand at 1886.862 kb on - strand, within AZOBR_RS00030 at 1887.242 kb on + strand at 1887.242 kb on + strand, within AZOBR_RS09025 at 1887.346 kb on - strand, within AZOBR_RS09025 at 1887.456 kb on + strand, within AZOBR_RS09025 at 1887.459 kb on + strand, within AZOBR_RS09025 at 1887.460 kb on - strand, within AZOBR_RS09025 at 1887.900 kb on + strand, within AZOBR_RS09030 at 1888.357 kb on - strand, within AZOBR_RS09030 at 1888.519 kb on + strand at 1888.519 kb on + strand at 1888.519 kb on + strand at 1888.527 kb on + strand at 1888.576 kb on + strand at 1888.576 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 1,886,142 + +0.1 1,886,143 - +0.3 1,886,195 + -0.2 1,886,196 - -0.6 1,886,800 - -0.6 1,886,800 - -0.2 1,886,862 - AZOBR_RS00030 0.33 -0.1 1,887,242 + -0.3 1,887,242 + AZOBR_RS09025 0.38 +0.4 1,887,346 - AZOBR_RS09025 0.55 -1.8 1,887,456 + AZOBR_RS09025 0.73 +0.6 1,887,459 + AZOBR_RS09025 0.74 +0.3 1,887,460 - AZOBR_RS09025 0.74 -3.3 1,887,900 + AZOBR_RS09030 0.33 -3.5 1,888,357 - AZOBR_RS09030 0.88 -3.5 1,888,519 + -0.7 1,888,519 + -0.7 1,888,519 + -0.1 1,888,527 + -1.3 1,888,576 + -1.9 1,888,576 + -0.5
Or see this region's nucleotide sequence