Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05035 and AZOBR_RS05040 are separated by 481 nucleotides AZOBR_RS05040 and AZOBR_RS05045 are separated by 112 nucleotides
AZOBR_RS05035: AZOBR_RS05035 - hypothetical protein, at 1,066,844 to 1,068,049
_RS05035
AZOBR_RS05040: AZOBR_RS05040 - hypothetical protein, at 1,068,531 to 1,069,316
_RS05040
AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072
_RS05045
Position (kb)
1068
1069
1070 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1067.644 kb on + strand, within AZOBR_RS05035 at 1067.645 kb on - strand, within AZOBR_RS05035 at 1067.826 kb on - strand, within AZOBR_RS05035 at 1067.978 kb on + strand at 1067.979 kb on - strand at 1067.979 kb on - strand at 1067.984 kb on + strand at 1067.984 kb on + strand at 1067.985 kb on - strand at 1067.985 kb on - strand at 1068.068 kb on + strand at 1068.068 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.262 kb on + strand at 1068.263 kb on - strand at 1068.263 kb on - strand at 1068.263 kb on - strand at 1068.263 kb on - strand at 1068.263 kb on - strand at 1068.278 kb on + strand at 1068.388 kb on + strand at 1068.473 kb on + strand at 1068.474 kb on - strand at 1068.474 kb on - strand at 1068.724 kb on + strand, within AZOBR_RS05040 at 1068.724 kb on + strand, within AZOBR_RS05040 at 1068.724 kb on + strand, within AZOBR_RS05040 at 1068.724 kb on + strand, within AZOBR_RS05040 at 1068.725 kb on - strand, within AZOBR_RS05040 at 1068.725 kb on - strand, within AZOBR_RS05040 at 1068.753 kb on + strand, within AZOBR_RS05040 at 1068.754 kb on - strand, within AZOBR_RS05040 at 1068.754 kb on - strand, within AZOBR_RS05040 at 1068.754 kb on - strand, within AZOBR_RS05040 at 1070.066 kb on + strand at 1070.207 kb on + strand at 1070.208 kb on - strand at 1070.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 1,067,644 + AZOBR_RS05035 0.66 -0.6 1,067,645 - AZOBR_RS05035 0.66 +1.2 1,067,826 - AZOBR_RS05035 0.81 -0.2 1,067,978 + -0.7 1,067,979 - +0.7 1,067,979 - -0.4 1,067,984 + -0.1 1,067,984 + -0.5 1,067,985 - +0.1 1,067,985 - -1.0 1,068,068 + -0.8 1,068,068 + +0.4 1,068,262 + -1.0 1,068,262 + +0.4 1,068,262 + -0.2 1,068,262 + +0.7 1,068,262 + -1.4 1,068,262 + +0.4 1,068,262 + +0.3 1,068,263 - -0.2 1,068,263 - -0.2 1,068,263 - -1.3 1,068,263 - +0.4 1,068,263 - -0.2 1,068,278 + +0.2 1,068,388 + -0.2 1,068,473 + -0.1 1,068,474 - -0.5 1,068,474 - -0.9 1,068,724 + AZOBR_RS05040 0.25 +0.1 1,068,724 + AZOBR_RS05040 0.25 +0.2 1,068,724 + AZOBR_RS05040 0.25 -0.8 1,068,724 + AZOBR_RS05040 0.25 +0.0 1,068,725 - AZOBR_RS05040 0.25 -0.5 1,068,725 - AZOBR_RS05040 0.25 -0.2 1,068,753 + AZOBR_RS05040 0.28 -0.5 1,068,754 - AZOBR_RS05040 0.28 -0.0 1,068,754 - AZOBR_RS05040 0.28 -0.7 1,068,754 - AZOBR_RS05040 0.28 -0.2 1,070,066 + -0.5 1,070,207 + +1.9 1,070,208 - +2.9 1,070,208 - +0.9
Or see this region's nucleotide sequence