Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04105

Experiment: Vancomycin 0.03 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS04100 and AZOBR_RS04105 are separated by 146 nucleotidesAZOBR_RS04105 and AZOBR_RS04110 are separated by 33 nucleotidesAZOBR_RS04110 and AZOBR_RS04115 are separated by 209 nucleotidesAZOBR_RS04115 and AZOBR_RS04120 are separated by 79 nucleotides AZOBR_RS04100: AZOBR_RS04100 - GTPase CgtA, at 862,492 to 863,682 _RS04100 AZOBR_RS04105: AZOBR_RS04105 - 50S ribosomal protein L27, at 863,829 to 864,107 _RS04105 AZOBR_RS04110: AZOBR_RS04110 - 50S ribosomal protein L21, at 864,141 to 864,458 _RS04110 AZOBR_RS04115: AZOBR_RS04115 - tRNA-Ser, at 864,668 to 864,757 _RS04115 AZOBR_RS04120: AZOBR_RS04120 - hypothetical protein, at 864,837 to 865,652 _RS04120 Position (kb) 863 864 865Strain fitness (log2 ratio) -1 0 1at 864.979 kb on + strand, within AZOBR_RS04120at 864.979 kb on + strand, within AZOBR_RS04120at 864.980 kb on - strand, within AZOBR_RS04120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
remove
864,979 + AZOBR_RS04120 0.17 +0.6
864,979 + AZOBR_RS04120 0.17 +1.6
864,980 - AZOBR_RS04120 0.18 -0.4

Or see this region's nucleotide sequence