Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03885 and AZOBR_RS03890 are separated by 149 nucleotides AZOBR_RS03890 and AZOBR_RS03895 are separated by 95 nucleotides
AZOBR_RS03885: AZOBR_RS03885 - phosphoglycerate kinase, at 819,773 to 820,969
_RS03885
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
AZOBR_RS03895: AZOBR_RS03895 - hypothetical protein, at 822,321 to 823,928
_RS03895
Position (kb) 821
822
823 Strain fitness (log2 ratio) -2
-1
0
1 at 821.113 kb on - strand at 821.113 kb on - strand at 821.239 kb on + strand, within AZOBR_RS03890 at 821.239 kb on + strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.240 kb on - strand, within AZOBR_RS03890 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890 at 822.040 kb on + strand, within AZOBR_RS03890 at 822.116 kb on - strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.260 kb on + strand at 822.261 kb on - strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.465 kb on + strand at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 821,113 - -0.1 821,113 - -0.0 821,239 + AZOBR_RS03890 0.11 -0.1 821,239 + AZOBR_RS03890 0.11 +0.4 821,240 - AZOBR_RS03890 0.11 -0.7 821,240 - AZOBR_RS03890 0.11 -2.0 821,240 - AZOBR_RS03890 0.11 +0.4 821,240 - AZOBR_RS03890 0.11 -1.7 821,386 + AZOBR_RS03890 0.24 +0.2 821,390 - AZOBR_RS03890 0.24 -1.0 821,548 + AZOBR_RS03890 0.39 -0.5 821,548 + AZOBR_RS03890 0.39 +0.1 821,548 + AZOBR_RS03890 0.39 -1.3 821,548 + AZOBR_RS03890 0.39 -0.2 821,548 + AZOBR_RS03890 0.39 +0.6 821,819 - AZOBR_RS03890 0.63 -0.0 821,819 - AZOBR_RS03890 0.63 +0.0 821,935 + AZOBR_RS03890 0.74 -0.9 821,935 + AZOBR_RS03890 0.74 +0.5 821,936 - AZOBR_RS03890 0.74 -0.3 822,040 + AZOBR_RS03890 0.83 -0.3 822,116 - +0.2 822,184 + -0.0 822,184 + -0.2 822,184 + +0.0 822,184 + -0.0 822,184 + -0.2 822,184 + -0.5 822,184 + -0.2 822,185 - +0.8 822,185 - -0.8 822,185 - +0.9 822,185 - -0.3 822,185 - +0.2 822,185 - -0.6 822,185 - -0.1 822,260 + -0.4 822,261 - +0.5 822,462 + +1.4 822,462 + +0.5 822,462 + -0.3 822,462 + -0.2 822,463 - -0.3 822,463 - -1.3 822,463 - -1.4 822,465 + -0.9 822,534 + AZOBR_RS03895 0.13 -2.6 822,534 + AZOBR_RS03895 0.13 +0.1 822,534 + AZOBR_RS03895 0.13 +0.4
Or see this region's nucleotide sequence