Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03865 and AZOBR_RS00005 are separated by 133 nucleotides AZOBR_RS00005 and AZOBR_RS03870 are separated by 96 nucleotides AZOBR_RS03870 and AZOBR_RS03875 are separated by 3 nucleotides AZOBR_RS03875 and AZOBR_RS03880 are separated by 59 nucleotides
AZOBR_RS03865: AZOBR_RS03865 - cytochrome C, at 815,905 to 816,444
_RS03865
AZOBR_RS00005: AZOBR_RS00005 - SRP_bact, at 816,578 to 816,680
_RS00005
AZOBR_RS03870: AZOBR_RS03870 - DNA polymerase III subunit gamma/tau, at 816,777 to 818,633
_RS03870
AZOBR_RS03875: AZOBR_RS03875 - hypothetical protein, at 818,637 to 818,960
_RS03875
AZOBR_RS03880: AZOBR_RS03880 - recombinase RecR, at 819,020 to 819,613
_RS03880
Position (kb) 816
817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 816.316 kb on + strand, within AZOBR_RS03865 at 816.687 kb on + strand at 818.573 kb on + strand at 818.573 kb on + strand at 818.601 kb on + strand at 818.601 kb on + strand at 818.602 kb on - strand at 818.959 kb on - strand at 818.959 kb on - strand at 818.980 kb on + strand at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.326 kb on + strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.327 kb on - strand, within AZOBR_RS03880 at 819.560 kb on + strand at 819.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 816,316 + AZOBR_RS03865 0.76 +0.1 816,687 + -3.5 818,573 + -0.3 818,573 + -0.2 818,601 + -0.1 818,601 + +0.5 818,602 - -0.6 818,959 - -2.3 818,959 - -0.9 818,980 + -0.1 819,326 + AZOBR_RS03880 0.52 -0.6 819,326 + AZOBR_RS03880 0.52 -1.6 819,326 + AZOBR_RS03880 0.52 -2.3 819,326 + AZOBR_RS03880 0.52 -2.4 819,327 - AZOBR_RS03880 0.52 -0.7 819,327 - AZOBR_RS03880 0.52 -1.4 819,327 - AZOBR_RS03880 0.52 -2.1 819,327 - AZOBR_RS03880 0.52 -1.2 819,560 + -1.8 819,611 + +0.4
Or see this region's nucleotide sequence