Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03790 and AZOBR_RS03795 are separated by 55 nucleotides AZOBR_RS03795 and AZOBR_RS03800 are separated by 212 nucleotides AZOBR_RS03800 and AZOBR_RS03805 are separated by 10 nucleotides AZOBR_RS03805 and AZOBR_RS03810 are separated by 2 nucleotides
AZOBR_RS03790: AZOBR_RS03790 - D-2-hydroxyacid dehydrogenase, at 799,834 to 800,760
_RS03790
AZOBR_RS03795: AZOBR_RS03795 - Pseudouridine synthase, at 800,816 to 801,454
_RS03795
AZOBR_RS03800: AZOBR_RS03800 - microcin ABC transporter ATP-binding protein, at 801,667 to 803,298
_RS03800
AZOBR_RS03805: AZOBR_RS03805 - twitching motility protein PilT, at 803,309 to 803,779
_RS03805
AZOBR_RS03810: AZOBR_RS03810 - prevent-host-death protein, at 803,782 to 804,024
_RS03810
Position (kb) 801
802
803
804 Strain fitness (log2 ratio) -1
0
1
2
3 at 800.776 kb on - strand at 800.846 kb on + strand at 800.847 kb on - strand at 800.847 kb on - strand at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.029 kb on + strand, within AZOBR_RS03795 at 801.030 kb on - strand, within AZOBR_RS03795 at 801.373 kb on + strand, within AZOBR_RS03795 at 801.413 kb on - strand at 801.413 kb on - strand at 801.413 kb on - strand at 801.462 kb on - strand at 801.462 kb on - strand at 801.592 kb on - strand at 801.622 kb on + strand at 801.668 kb on + strand at 801.668 kb on + strand at 801.669 kb on - strand at 801.734 kb on + strand at 801.734 kb on + strand at 801.735 kb on - strand at 801.860 kb on + strand, within AZOBR_RS03800 at 802.538 kb on + strand, within AZOBR_RS03800 at 802.538 kb on + strand, within AZOBR_RS03800 at 802.539 kb on - strand, within AZOBR_RS03800 at 803.112 kb on - strand, within AZOBR_RS03800 at 803.310 kb on + strand at 803.310 kb on + strand at 803.310 kb on + strand at 803.310 kb on + strand at 803.311 kb on - strand at 803.311 kb on - strand at 803.792 kb on + strand at 803.793 kb on - strand at 803.945 kb on + strand, within AZOBR_RS03810 at 803.945 kb on + strand, within AZOBR_RS03810 at 803.945 kb on + strand at 803.945 kb on + strand, within AZOBR_RS03810 at 803.946 kb on - strand, within AZOBR_RS03810
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 800,776 - +0.7 800,846 + -0.2 800,847 - +2.9 800,847 - +0.8 801,029 + AZOBR_RS03795 0.33 -0.1 801,029 + AZOBR_RS03795 0.33 -0.2 801,029 + AZOBR_RS03795 0.33 -0.1 801,029 + AZOBR_RS03795 0.33 -0.2 801,029 + AZOBR_RS03795 0.33 -0.4 801,029 + AZOBR_RS03795 0.33 -0.8 801,030 - AZOBR_RS03795 0.33 -0.3 801,373 + AZOBR_RS03795 0.87 -1.5 801,413 - -0.1 801,413 - +0.7 801,413 - +0.3 801,462 - +0.5 801,462 - -0.1 801,592 - -0.2 801,622 + -0.2 801,668 + +0.4 801,668 + -0.7 801,669 - +0.4 801,734 + +0.4 801,734 + -0.4 801,735 - +0.3 801,860 + AZOBR_RS03800 0.12 -0.4 802,538 + AZOBR_RS03800 0.53 +0.2 802,538 + AZOBR_RS03800 0.53 -0.4 802,539 - AZOBR_RS03800 0.53 -1.3 803,112 - AZOBR_RS03800 0.89 -1.2 803,310 + +0.4 803,310 + -0.1 803,310 + +0.0 803,310 + +0.0 803,311 - +0.8 803,311 - +0.9 803,792 + -0.3 803,793 - +0.3 803,945 + AZOBR_RS03810 0.67 -0.0 803,945 + AZOBR_RS03810 0.67 -0.8 803,945 + +3.1 803,945 + AZOBR_RS03810 0.67 -1.2 803,946 - AZOBR_RS03810 0.67 -0.3
Or see this region's nucleotide sequence