Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS02355

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS02350 and AZOBR_RS02355 are separated by 794 nucleotidesAZOBR_RS02355 and AZOBR_RS02360 are separated by 103 nucleotidesAZOBR_RS02360 and AZOBR_RS02365 are separated by 191 nucleotides AZOBR_RS02350: AZOBR_RS02350 - hypothetical protein, at 484,407 to 484,586 _RS02350 AZOBR_RS02355: AZOBR_RS02355 - hypothetical protein, at 485,381 to 485,752 _RS02355 AZOBR_RS02360: AZOBR_RS02360 - hypothetical protein, at 485,856 to 486,371 _RS02360 AZOBR_RS02365: AZOBR_RS02365 - hypothetical protein, at 486,563 to 487,030 _RS02365 Position (kb) 485 486Strain fitness (log2 ratio) -1 0 1at 484.727 kb on + strandat 484.728 kb on - strandat 485.060 kb on - strandat 485.060 kb on - strandat 485.264 kb on + strandat 485.264 kb on + strandat 485.264 kb on + strandat 485.902 kb on + strandat 485.902 kb on + strandat 486.035 kb on - strand, within AZOBR_RS02360at 486.064 kb on + strand, within AZOBR_RS02360at 486.065 kb on - strand, within AZOBR_RS02360at 486.692 kb on - strand, within AZOBR_RS02365

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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484,727 + -0.2
484,728 - -0.5
485,060 - +1.0
485,060 - +0.2
485,264 + -0.0
485,264 + -0.3
485,264 + -0.1
485,902 + +0.4
485,902 + -0.1
486,035 - AZOBR_RS02360 0.35 -0.5
486,064 + AZOBR_RS02360 0.40 +0.5
486,065 - AZOBR_RS02360 0.41 +1.1
486,692 - AZOBR_RS02365 0.28 +0.2

Or see this region's nucleotide sequence