Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01845

Experiment: Vancomycin 0.03 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01835 and AZOBR_RS01840 are separated by 49 nucleotidesAZOBR_RS01840 and AZOBR_RS01845 overlap by 14 nucleotidesAZOBR_RS01845 and AZOBR_RS01850 are separated by 112 nucleotidesAZOBR_RS01850 and AZOBR_RS01855 are separated by 343 nucleotides AZOBR_RS01835: AZOBR_RS01835 - DNA polymerase III subunit delta, at 373,374 to 374,396 _RS01835 AZOBR_RS01840: AZOBR_RS01840 - hypothetical protein, at 374,446 to 375,009 _RS01840 AZOBR_RS01845: AZOBR_RS01845 - leucyl-tRNA synthetase, at 374,996 to 377,566 _RS01845 AZOBR_RS01850: AZOBR_RS01850 - hypothetical protein, at 377,679 to 378,218 _RS01850 AZOBR_RS01855: AZOBR_RS01855 - major outer membrane protein OmaA, at 378,562 to 379,734 _RS01855 Position (kb) 374 375 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1at 377.602 kb on - strandat 377.610 kb on - strandat 377.858 kb on - strand, within AZOBR_RS01850at 377.903 kb on - strand, within AZOBR_RS01850at 378.290 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml
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377,602 - -2.3
377,610 - -1.4
377,858 - AZOBR_RS01850 0.33 -1.4
377,903 - AZOBR_RS01850 0.41 -3.2
378,290 - -2.4

Or see this region's nucleotide sequence