Experiment: Vancomycin 0.03 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01625 and AZOBR_RS01630 are separated by 122 nucleotides AZOBR_RS01630 and AZOBR_RS01635 are separated by 12 nucleotides AZOBR_RS01635 and AZOBR_RS01640 are separated by 526 nucleotides
AZOBR_RS01625: AZOBR_RS01625 - hypothetical protein, at 333,282 to 333,968
_RS01625
AZOBR_RS01630: AZOBR_RS01630 - DNA mismatch repair protein MutS, at 334,091 to 334,663
_RS01630
AZOBR_RS01635: AZOBR_RS01635 - XRE family transcriptional regulator, at 334,676 to 335,080
_RS01635
AZOBR_RS01640: AZOBR_RS01640 - hypothetical protein, at 335,607 to 336,788
_RS01640
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 333.992 kb on - strand at 333.992 kb on - strand at 334.502 kb on + strand, within AZOBR_RS01630 at 334.502 kb on + strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.503 kb on - strand, within AZOBR_RS01630 at 334.625 kb on + strand at 334.625 kb on + strand at 334.625 kb on + strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.626 kb on - strand at 334.770 kb on - strand, within AZOBR_RS01635 at 335.078 kb on + strand at 335.193 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.246 kb on + strand at 335.856 kb on + strand, within AZOBR_RS01640 at 335.856 kb on + strand, within AZOBR_RS01640 at 335.856 kb on + strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.857 kb on - strand, within AZOBR_RS01640 at 335.868 kb on + strand, within AZOBR_RS01640 at 335.869 kb on - strand, within AZOBR_RS01640
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.03 mg/ml remove 333,992 - -0.9 333,992 - -0.7 334,502 + AZOBR_RS01630 0.72 +0.5 334,502 + AZOBR_RS01630 0.72 -0.4 334,503 - AZOBR_RS01630 0.72 -0.6 334,503 - AZOBR_RS01630 0.72 -0.4 334,503 - AZOBR_RS01630 0.72 -0.2 334,625 + +0.8 334,625 + -1.4 334,625 + -0.1 334,626 - -0.4 334,626 - -1.0 334,626 - -0.4 334,626 - -0.7 334,770 - AZOBR_RS01635 0.23 -1.8 335,078 + +0.1 335,193 + +0.5 335,246 + -0.5 335,246 + +0.9 335,246 + -0.5 335,246 + +0.0 335,856 + AZOBR_RS01640 0.21 -0.3 335,856 + AZOBR_RS01640 0.21 -2.6 335,856 + AZOBR_RS01640 0.21 -0.7 335,857 - AZOBR_RS01640 0.21 -1.9 335,857 - AZOBR_RS01640 0.21 +0.1 335,857 - AZOBR_RS01640 0.21 -0.1 335,868 + AZOBR_RS01640 0.22 -0.1 335,869 - AZOBR_RS01640 0.22 -0.0
Or see this region's nucleotide sequence