Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03865 and MMP_RS08965 are separated by 93 nucleotides MMP_RS08965 and MMP_RS03870 are separated by 20 nucleotides MMP_RS03870 and MMP_RS03875 are separated by 686 nucleotides
MMP_RS03865: MMP_RS03865 - aspartate/glutamate racemase family protein, at 732,154 to 732,858
_RS03865
MMP_RS08965: MMP_RS08965 - hypothetical protein, at 732,952 to 733,107
_RS08965
MMP_RS03870: MMP_RS03870 - purine NTPase, at 733,128 to 733,808
_RS03870
MMP_RS03875: MMP_RS03875 - hypothetical protein, at 734,495 to 734,872
_RS03875
Position (kb) 733
734 Strain fitness (log2 ratio) -1
0
1 at 732.231 kb on - strand, within MMP_RS03865 at 732.232 kb on + strand, within MMP_RS03865 at 732.232 kb on + strand, within MMP_RS03865 at 732.249 kb on - strand, within MMP_RS03865 at 732.249 kb on - strand, within MMP_RS03865 at 732.281 kb on + strand, within MMP_RS03865 at 732.310 kb on + strand, within MMP_RS03865 at 732.310 kb on + strand, within MMP_RS03865 at 732.310 kb on + strand, within MMP_RS03865 at 732.373 kb on + strand, within MMP_RS03865 at 732.419 kb on + strand, within MMP_RS03865 at 732.419 kb on + strand, within MMP_RS03865 at 732.422 kb on + strand, within MMP_RS03865 at 732.491 kb on + strand, within MMP_RS03865 at 732.568 kb on - strand, within MMP_RS03865 at 732.570 kb on - strand, within MMP_RS03865 at 732.571 kb on + strand, within MMP_RS03865 at 732.616 kb on - strand, within MMP_RS03865 at 732.744 kb on - strand, within MMP_RS03865 at 732.775 kb on + strand, within MMP_RS03865 at 732.807 kb on + strand at 732.872 kb on - strand at 732.873 kb on + strand at 732.873 kb on + strand at 732.875 kb on - strand at 732.886 kb on + strand at 732.907 kb on + strand at 732.930 kb on + strand at 733.100 kb on + strand at 733.125 kb on - strand at 733.152 kb on - strand at 733.218 kb on - strand, within MMP_RS03870 at 733.547 kb on - strand, within MMP_RS03870 at 733.550 kb on + strand, within MMP_RS03870 at 733.566 kb on - strand, within MMP_RS03870 at 733.571 kb on - strand, within MMP_RS03870 at 733.622 kb on + strand, within MMP_RS03870 at 733.855 kb on + strand at 733.941 kb on + strand at 733.964 kb on - strand at 733.976 kb on - strand at 733.986 kb on - strand at 733.986 kb on - strand at 733.987 kb on + strand at 733.997 kb on + strand at 734.102 kb on + strand at 734.108 kb on - strand at 734.170 kb on - strand at 734.171 kb on + strand at 734.174 kb on + strand at 734.174 kb on + strand at 734.218 kb on - strand at 734.239 kb on - strand at 734.277 kb on + strand at 734.281 kb on - strand at 734.281 kb on - strand at 734.286 kb on + strand at 734.292 kb on - strand at 734.392 kb on - strand at 734.393 kb on + strand at 734.409 kb on + strand at 734.413 kb on + strand at 734.497 kb on + strand at 734.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations remove 732,231 - MMP_RS03865 0.11 -0.3 732,232 + MMP_RS03865 0.11 -0.3 732,232 + MMP_RS03865 0.11 -0.5 732,249 - MMP_RS03865 0.13 -0.6 732,249 - MMP_RS03865 0.13 +0.3 732,281 + MMP_RS03865 0.18 -0.0 732,310 + MMP_RS03865 0.22 -0.3 732,310 + MMP_RS03865 0.22 +0.1 732,310 + MMP_RS03865 0.22 -0.1 732,373 + MMP_RS03865 0.31 -0.8 732,419 + MMP_RS03865 0.38 -0.8 732,419 + MMP_RS03865 0.38 +1.3 732,422 + MMP_RS03865 0.38 +0.0 732,491 + MMP_RS03865 0.48 +0.1 732,568 - MMP_RS03865 0.59 -0.4 732,570 - MMP_RS03865 0.59 +0.3 732,571 + MMP_RS03865 0.59 -0.1 732,616 - MMP_RS03865 0.66 -0.2 732,744 - MMP_RS03865 0.84 +0.0 732,775 + MMP_RS03865 0.88 +0.1 732,807 + +0.2 732,872 - +0.3 732,873 + -0.2 732,873 + +0.3 732,875 - +0.2 732,886 + -0.1 732,907 + -0.3 732,930 + -0.6 733,100 + +0.4 733,125 - +0.3 733,152 - +0.1 733,218 - MMP_RS03870 0.13 +0.2 733,547 - MMP_RS03870 0.62 -0.4 733,550 + MMP_RS03870 0.62 +0.2 733,566 - MMP_RS03870 0.64 +0.8 733,571 - MMP_RS03870 0.65 +0.3 733,622 + MMP_RS03870 0.73 +0.2 733,855 + -0.0 733,941 + +0.2 733,964 - +0.6 733,976 - +0.2 733,986 - -0.1 733,986 - +0.0 733,987 + +0.7 733,997 + +0.2 734,102 + +0.5 734,108 - -0.2 734,170 - -0.1 734,171 + -0.1 734,174 + -0.1 734,174 + -0.6 734,218 - -0.3 734,239 - -1.0 734,277 + +0.6 734,281 - -0.1 734,281 - -0.0 734,286 + -0.8 734,292 - -0.6 734,392 - +0.0 734,393 + -0.2 734,409 + +0.5 734,413 + +0.3 734,497 + -0.3 734,498 - -0.1
Or see this region's nucleotide sequence