Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS03355 and MMP_RS03360 are separated by 95 nucleotides MMP_RS03360 and MMP_RS03365 are separated by 19 nucleotides MMP_RS03365 and MMP_RS03370 are separated by 39 nucleotides MMP_RS03370 and MMP_RS03375 are separated by 147 nucleotides
MMP_RS03355: MMP_RS03355 - beta-propeller domain-containing protein, at 630,535 to 632,772
_RS03355
MMP_RS03360: MMP_RS03360 - 50S ribosomal protein L24, at 632,868 to 633,056
_RS03360
MMP_RS03365: MMP_RS03365 - 30S ribosomal protein S28e, at 633,076 to 633,306
_RS03365
MMP_RS03370: MMP_RS03370 - 50S ribosomal protein L7Ae, at 633,346 to 633,699
_RS03370
MMP_RS03375: MMP_RS03375 - methanogenesis marker 12 protein, at 633,847 to 634,824
_RS03375
Position (kb) 633
634 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 632.347 kb on - strand, within MMP_RS03355 at 632.348 kb on + strand, within MMP_RS03355 at 632.361 kb on + strand, within MMP_RS03355 at 632.510 kb on - strand, within MMP_RS03355 at 632.582 kb on - strand at 632.589 kb on + strand at 632.589 kb on + strand at 632.619 kb on + strand at 632.739 kb on + strand at 632.739 kb on + strand at 632.742 kb on - strand at 632.837 kb on - strand at 633.691 kb on - strand at 633.692 kb on + strand at 633.790 kb on - strand at 633.793 kb on + strand at 633.810 kb on + strand at 633.816 kb on - strand at 633.839 kb on - strand at 633.889 kb on - strand at 634.127 kb on - strand at 634.333 kb on - strand at 634.397 kb on - strand at 634.398 kb on + strand at 634.588 kb on - strand at 634.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse3; 20 generations remove 632,347 - MMP_RS03355 0.81 +0.4 632,348 + MMP_RS03355 0.81 +0.0 632,361 + MMP_RS03355 0.82 +0.2 632,510 - MMP_RS03355 0.88 -0.1 632,582 - -0.2 632,589 + -0.3 632,589 + +0.0 632,619 + +0.0 632,739 + -0.1 632,739 + -0.1 632,742 - +0.4 632,837 - -0.2 633,691 - +0.9 633,692 + -2.4 633,790 - -3.3 633,793 + -3.0 633,810 + -3.2 633,816 - -3.0 633,839 - +0.4 633,889 - -2.6 634,127 - -4.6 634,333 - -3.1 634,397 - -4.4 634,398 + -3.7 634,588 - -5.0 634,655 + -4.4
Or see this region's nucleotide sequence