Experiment: Cadmium acetate 8 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03715 and IAI47_03720 are separated by 181 nucleotides IAI47_03720 and IAI47_03725 are separated by 279 nucleotides
IAI47_03715: IAI47_03715 - LysR family transcriptional regulator ArgP, at 775,357 to 776,262
_03715
IAI47_03720: IAI47_03720 - ribose-5-phosphate isomerase RpiA, at 776,444 to 777,103
_03720
IAI47_03725: IAI47_03725 - phosphoglycerate dehydrogenase, at 777,383 to 778,621
_03725
Position (kb) 776
777
778 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.460 kb on + strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.461 kb on - strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.478 kb on + strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.479 kb on - strand, within IAI47_03715 at 775.501 kb on + strand, within IAI47_03715 at 775.502 kb on - strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.548 kb on + strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.549 kb on - strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.665 kb on + strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.666 kb on - strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.827 kb on + strand, within IAI47_03715 at 775.828 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.066 kb on - strand, within IAI47_03715 at 776.175 kb on + strand at 776.175 kb on + strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.176 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.264 kb on - strand at 776.266 kb on + strand at 776.266 kb on + strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.267 kb on - strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.295 kb on + strand at 776.296 kb on - strand at 776.296 kb on - strand at 776.311 kb on + strand at 776.311 kb on + strand at 776.312 kb on - strand at 776.312 kb on - strand at 776.356 kb on + strand at 776.357 kb on + strand at 776.357 kb on + strand at 776.401 kb on + strand at 776.401 kb on + strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.402 kb on - strand at 776.403 kb on + strand at 776.403 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.406 kb on + strand at 776.434 kb on + strand at 776.434 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 776.440 kb on + strand at 777.091 kb on + strand at 777.092 kb on - strand at 777.132 kb on - strand at 777.132 kb on - strand at 777.181 kb on + strand at 777.181 kb on + strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.182 kb on - strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.190 kb on + strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.191 kb on - strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.255 kb on + strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.256 kb on - strand at 777.300 kb on + strand at 777.345 kb on + strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.346 kb on - strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.350 kb on + strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.351 kb on - strand at 777.372 kb on - strand at 777.372 kb on - strand at 777.393 kb on + strand at 777.393 kb on + strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.394 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.410 kb on - strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.415 kb on + strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.416 kb on - strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.476 kb on + strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.477 kb on - strand at 777.479 kb on - strand at 777.479 kb on - strand at 777.523 kb on - strand, within IAI47_03725 at 777.555 kb on + strand, within IAI47_03725 at 777.808 kb on - strand, within IAI47_03725 at 777.847 kb on + strand, within IAI47_03725 at 777.857 kb on + strand, within IAI47_03725 at 777.908 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.920 kb on + strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.921 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 777.964 kb on - strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.039 kb on + strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725 at 778.040 kb on - strand, within IAI47_03725
Per-strain Table
Position Strand Gene LocusTag Fraction Cadmium acetate 8 uM, aerobic remove 775,460 + IAI47_03715 0.11 -0.6 775,460 + IAI47_03715 0.11 -0.0 775,460 + IAI47_03715 0.11 +0.0 775,460 + IAI47_03715 0.11 -1.1 775,460 + IAI47_03715 0.11 +0.2 775,461 - IAI47_03715 0.11 -0.5 775,461 - IAI47_03715 0.11 -0.1 775,461 - IAI47_03715 0.11 -0.4 775,461 - IAI47_03715 0.11 +1.5 775,478 + IAI47_03715 0.13 +0.9 775,478 + IAI47_03715 0.13 -0.5 775,478 + IAI47_03715 0.13 -1.5 775,478 + IAI47_03715 0.13 -0.8 775,478 + IAI47_03715 0.13 -0.3 775,479 - IAI47_03715 0.13 -0.0 775,479 - IAI47_03715 0.13 -0.2 775,479 - IAI47_03715 0.13 +0.6 775,479 - IAI47_03715 0.13 +0.2 775,479 - IAI47_03715 0.13 +0.6 775,479 - IAI47_03715 0.13 +0.0 775,479 - IAI47_03715 0.13 +0.5 775,501 + IAI47_03715 0.16 +0.3 775,502 - IAI47_03715 0.16 +0.0 775,548 + IAI47_03715 0.21 -0.2 775,548 + IAI47_03715 0.21 +0.3 775,548 + IAI47_03715 0.21 -0.3 775,549 - IAI47_03715 0.21 +0.0 775,549 - IAI47_03715 0.21 -2.3 775,665 + IAI47_03715 0.34 -0.1 775,665 + IAI47_03715 0.34 +0.6 775,665 + IAI47_03715 0.34 +1.4 775,665 + IAI47_03715 0.34 -0.5 775,665 + IAI47_03715 0.34 -0.3 775,665 + IAI47_03715 0.34 +0.7 775,665 + IAI47_03715 0.34 -0.4 775,666 - IAI47_03715 0.34 +0.6 775,666 - IAI47_03715 0.34 -0.6 775,666 - IAI47_03715 0.34 -1.0 775,666 - IAI47_03715 0.34 +0.8 775,666 - IAI47_03715 0.34 +1.0 775,666 - IAI47_03715 0.34 -0.7 775,666 - IAI47_03715 0.34 -1.0 775,827 + IAI47_03715 0.52 +1.0 775,827 + IAI47_03715 0.52 -1.1 775,827 + IAI47_03715 0.52 +0.2 775,828 - IAI47_03715 0.52 +0.2 776,066 - IAI47_03715 0.78 +0.3 776,066 - IAI47_03715 0.78 +0.7 776,175 + +1.8 776,175 + -0.5 776,176 - -0.6 776,176 - -0.2 776,176 - -1.5 776,264 - +0.3 776,264 - -0.4 776,264 - -0.4 776,266 + -1.7 776,266 + -0.6 776,267 - +0.4 776,267 - +0.1 776,267 - +1.5 776,295 + -0.1 776,295 + +0.4 776,295 + +0.3 776,295 + +0.5 776,295 + +0.2 776,296 - +3.0 776,296 - -0.4 776,311 + +0.2 776,311 + -0.1 776,312 - +0.4 776,312 - -0.7 776,356 + +0.5 776,357 + +0.5 776,357 + +0.6 776,401 + +0.2 776,401 + -0.1 776,402 - +0.1 776,402 - -0.5 776,402 - +0.2 776,403 + +0.9 776,403 + -0.3 776,406 + -0.8 776,406 + -1.3 776,406 + +1.0 776,406 + -0.7 776,434 + -0.5 776,434 + -1.4 776,440 + -1.1 776,440 + -2.2 776,440 + -0.7 776,440 + -3.2 776,440 + -1.8 777,091 + -0.5 777,092 - +1.5 777,132 - +0.6 777,132 - +0.3 777,181 + -0.7 777,181 + -1.2 777,182 - -2.5 777,182 - -1.1 777,182 - -2.5 777,182 - +0.1 777,182 - -0.8 777,182 - -0.5 777,182 - -0.9 777,182 - -1.0 777,190 + -0.5 777,190 + +0.2 777,190 + -1.3 777,190 + -0.9 777,191 - -0.2 777,191 - -2.6 777,191 - -2.3 777,255 + +0.4 777,255 + -1.9 777,255 + -0.2 777,256 - -0.3 777,256 - +0.3 777,256 - +0.2 777,256 - -1.8 777,256 - -3.0 777,256 - -2.2 777,256 - -0.0 777,256 - -1.5 777,256 - +0.6 777,300 + -1.2 777,345 + -1.4 777,346 - -2.5 777,346 - -2.5 777,346 - -3.3 777,346 - -2.7 777,346 - -3.2 777,346 - -3.1 777,346 - -5.7 777,346 - -3.1 777,350 + -2.4 777,350 + -1.0 777,350 + +0.1 777,350 + +0.6 777,351 - -3.5 777,351 - -3.0 777,351 - -2.9 777,351 - -2.1 777,351 - -0.5 777,372 - -2.3 777,372 - -2.2 777,393 + -1.0 777,393 + -1.5 777,394 - -1.4 777,394 - -1.1 777,394 - -1.4 777,394 - -0.4 777,394 - -4.3 777,394 - -3.9 777,394 - -3.6 777,410 - -2.0 777,410 - +1.0 777,410 - -2.9 777,415 + -1.5 777,415 + -3.2 777,415 + -2.4 777,415 + -2.1 777,415 + -3.0 777,415 + -1.6 777,416 - -2.1 777,416 - -0.9 777,416 - -1.4 777,416 - -3.3 777,476 + -2.4 777,476 + -1.0 777,476 + -2.7 777,476 + -1.3 777,476 + -2.0 777,477 - -2.0 777,477 - -1.1 777,477 - -2.2 777,479 - -2.2 777,479 - -1.2 777,523 - IAI47_03725 0.11 -3.4 777,555 + IAI47_03725 0.14 -3.9 777,808 - IAI47_03725 0.34 -1.8 777,847 + IAI47_03725 0.37 -2.8 777,857 + IAI47_03725 0.38 -1.3 777,908 + IAI47_03725 0.42 -4.6 777,920 + IAI47_03725 0.43 -4.2 777,920 + IAI47_03725 0.43 -2.0 777,921 - IAI47_03725 0.43 -2.9 777,921 - IAI47_03725 0.43 -0.9 777,921 - IAI47_03725 0.43 -3.1 777,964 - IAI47_03725 0.47 +1.0 777,964 - IAI47_03725 0.47 -3.5 778,039 + IAI47_03725 0.53 -1.5 778,039 + IAI47_03725 0.53 -1.5 778,040 - IAI47_03725 0.53 -3.7 778,040 - IAI47_03725 0.53 -2.4
Or see this region's nucleotide sequence