Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18040

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS18045 and HMPREF1058_RS18040 are separated by 154 nucleotidesHMPREF1058_RS18040 and HMPREF1058_RS18035 are separated by 295 nucleotides HMPREF1058_RS18045: HMPREF1058_RS18045 - cytochrome ubiquinol oxidase subunit I, at 269,433 to 270,935 _RS18045 HMPREF1058_RS18040: HMPREF1058_RS18040 - cytochrome d ubiquinol oxidase subunit II, at 271,090 to 272,235 _RS18040 HMPREF1058_RS18035: HMPREF1058_RS18035 - 6-phosphogluconolactonase, at 272,531 to 273,235 _RS18035 Position (kb) 271 272 273Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 270.176 kb on - strand, within HMPREF1058_RS18045at 270.318 kb on + strand, within HMPREF1058_RS18045at 270.322 kb on + strand, within HMPREF1058_RS18045at 270.372 kb on - strand, within HMPREF1058_RS18045at 270.528 kb on + strand, within HMPREF1058_RS18045at 270.530 kb on + strand, within HMPREF1058_RS18045at 270.530 kb on + strand, within HMPREF1058_RS18045at 270.562 kb on + strand, within HMPREF1058_RS18045at 270.629 kb on + strand, within HMPREF1058_RS18045at 270.630 kb on - strand, within HMPREF1058_RS18045at 270.630 kb on - strand, within HMPREF1058_RS18045at 270.631 kb on + strand, within HMPREF1058_RS18045at 270.631 kb on + strand, within HMPREF1058_RS18045at 270.679 kb on + strand, within HMPREF1058_RS18045at 270.780 kb on - strand, within HMPREF1058_RS18045at 270.780 kb on - strand, within HMPREF1058_RS18045at 270.833 kb on + strandat 270.884 kb on - strandat 270.884 kb on - strandat 270.927 kb on - strandat 270.976 kb on + strandat 270.990 kb on - strandat 270.999 kb on + strandat 271.000 kb on - strandat 271.081 kb on + strandat 271.082 kb on - strandat 271.098 kb on + strandat 271.100 kb on + strandat 271.127 kb on + strandat 271.127 kb on + strandat 271.318 kb on + strand, within HMPREF1058_RS18040at 271.319 kb on - strand, within HMPREF1058_RS18040at 271.434 kb on + strand, within HMPREF1058_RS18040at 271.434 kb on + strand, within HMPREF1058_RS18040at 271.439 kb on - strand, within HMPREF1058_RS18040at 271.465 kb on - strand, within HMPREF1058_RS18040at 271.470 kb on - strand, within HMPREF1058_RS18040at 271.743 kb on + strand, within HMPREF1058_RS18040at 271.744 kb on - strand, within HMPREF1058_RS18040at 271.761 kb on - strand, within HMPREF1058_RS18040at 271.832 kb on - strand, within HMPREF1058_RS18040at 271.833 kb on + strand, within HMPREF1058_RS18040at 271.844 kb on - strand, within HMPREF1058_RS18040at 271.962 kb on + strand, within HMPREF1058_RS18040at 271.997 kb on + strand, within HMPREF1058_RS18040at 272.000 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.025 kb on + strand, within HMPREF1058_RS18040at 272.026 kb on - strand, within HMPREF1058_RS18040at 272.028 kb on + strand, within HMPREF1058_RS18040at 272.033 kb on - strand, within HMPREF1058_RS18040at 272.038 kb on + strandat 272.122 kb on + strandat 272.138 kb on + strandat 272.155 kb on + strandat 272.158 kb on - strandat 272.160 kb on + strandat 272.164 kb on + strandat 272.181 kb on - strandat 272.196 kb on + strandat 272.230 kb on + strandat 272.253 kb on + strandat 272.253 kb on + strandat 272.342 kb on + strandat 272.342 kb on + strandat 272.343 kb on - strandat 272.363 kb on - strandat 272.460 kb on + strandat 272.461 kb on - strandat 272.461 kb on - strandat 272.469 kb on + strandat 272.470 kb on - strandat 272.498 kb on - strandat 272.520 kb on + strandat 272.529 kb on + strandat 272.533 kb on - strandat 272.538 kb on - strandat 272.550 kb on + strandat 272.551 kb on - strandat 272.564 kb on - strandat 272.582 kb on - strandat 272.584 kb on - strandat 272.584 kb on - strandat 272.672 kb on - strand, within HMPREF1058_RS18035at 272.710 kb on + strand, within HMPREF1058_RS18035at 272.728 kb on - strand, within HMPREF1058_RS18035at 272.748 kb on + strand, within HMPREF1058_RS18035at 272.800 kb on + strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.801 kb on - strand, within HMPREF1058_RS18035at 272.826 kb on - strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.889 kb on + strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.938 kb on - strand, within HMPREF1058_RS18035at 272.957 kb on + strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.958 kb on - strand, within HMPREF1058_RS18035at 272.963 kb on - strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.066 kb on + strand, within HMPREF1058_RS18035at 273.067 kb on - strand, within HMPREF1058_RS18035at 273.113 kb on - strand, within HMPREF1058_RS18035at 273.137 kb on - strand, within HMPREF1058_RS18035at 273.173 kb on + strandat 273.174 kb on - strandat 273.176 kb on - strandat 273.176 kb on - strandat 273.183 kb on - strandat 273.204 kb on - strandat 273.217 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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270,176 - HMPREF1058_RS18045 0.49 -0.0
270,318 + HMPREF1058_RS18045 0.59 -0.1
270,322 + HMPREF1058_RS18045 0.59 +1.9
270,372 - HMPREF1058_RS18045 0.62 -0.8
270,528 + HMPREF1058_RS18045 0.73 -0.8
270,530 + HMPREF1058_RS18045 0.73 -0.9
270,530 + HMPREF1058_RS18045 0.73 -3.0
270,562 + HMPREF1058_RS18045 0.75 +0.9
270,629 + HMPREF1058_RS18045 0.80 +0.5
270,630 - HMPREF1058_RS18045 0.80 +1.3
270,630 - HMPREF1058_RS18045 0.80 -0.5
270,631 + HMPREF1058_RS18045 0.80 +0.9
270,631 + HMPREF1058_RS18045 0.80 +0.9
270,679 + HMPREF1058_RS18045 0.83 -1.4
270,780 - HMPREF1058_RS18045 0.90 +0.3
270,780 - HMPREF1058_RS18045 0.90 -0.1
270,833 + +1.3
270,884 - +0.9
270,884 - +1.8
270,927 - -3.2
270,976 + +0.1
270,990 - +0.0
270,999 + -1.0
271,000 - -0.2
271,081 + -0.2
271,082 - +0.2
271,098 + +0.1
271,100 + +0.1
271,127 + -2.8
271,127 + -2.7
271,318 + HMPREF1058_RS18040 0.20 -0.5
271,319 - HMPREF1058_RS18040 0.20 -2.9
271,434 + HMPREF1058_RS18040 0.30 -0.2
271,434 + HMPREF1058_RS18040 0.30 -1.2
271,439 - HMPREF1058_RS18040 0.30 -0.2
271,465 - HMPREF1058_RS18040 0.33 +1.1
271,470 - HMPREF1058_RS18040 0.33 +1.0
271,743 + HMPREF1058_RS18040 0.57 +0.4
271,744 - HMPREF1058_RS18040 0.57 +0.5
271,761 - HMPREF1058_RS18040 0.59 -0.3
271,832 - HMPREF1058_RS18040 0.65 -0.0
271,833 + HMPREF1058_RS18040 0.65 +1.5
271,844 - HMPREF1058_RS18040 0.66 -0.1
271,962 + HMPREF1058_RS18040 0.76 -2.2
271,997 + HMPREF1058_RS18040 0.79 +0.1
272,000 + HMPREF1058_RS18040 0.79 +0.6
272,025 + HMPREF1058_RS18040 0.82 +0.7
272,025 + HMPREF1058_RS18040 0.82 -0.8
272,026 - HMPREF1058_RS18040 0.82 -0.6
272,028 + HMPREF1058_RS18040 0.82 -1.0
272,033 - HMPREF1058_RS18040 0.82 +0.0
272,038 + +0.8
272,122 + -1.1
272,138 + -0.0
272,155 + +1.1
272,158 - -0.4
272,160 + -2.5
272,164 + -1.2
272,181 - -1.9
272,196 + -0.8
272,230 + +0.1
272,253 + +0.6
272,253 + +0.1
272,342 + +1.0
272,342 + -1.1
272,343 - +0.6
272,363 - -1.3
272,460 + -1.3
272,461 - +0.3
272,461 - -1.3
272,469 + +1.3
272,470 - +0.1
272,498 - -0.3
272,520 + -0.4
272,529 + -0.9
272,533 - +0.7
272,538 - -3.1
272,550 + -1.8
272,551 - -3.7
272,564 - -1.5
272,582 - -0.1
272,584 - -1.6
272,584 - -3.6
272,672 - HMPREF1058_RS18035 0.20 +0.1
272,710 + HMPREF1058_RS18035 0.25 -0.9
272,728 - HMPREF1058_RS18035 0.28 -1.8
272,748 + HMPREF1058_RS18035 0.31 -3.1
272,800 + HMPREF1058_RS18035 0.38 -0.6
272,801 - HMPREF1058_RS18035 0.38 -3.0
272,801 - HMPREF1058_RS18035 0.38 -3.8
272,826 - HMPREF1058_RS18035 0.42 -2.3
272,889 + HMPREF1058_RS18035 0.51 -3.9
272,889 + HMPREF1058_RS18035 0.51 -1.2
272,938 - HMPREF1058_RS18035 0.58 -2.4
272,938 - HMPREF1058_RS18035 0.58 -1.5
272,957 + HMPREF1058_RS18035 0.60 -2.8
272,958 - HMPREF1058_RS18035 0.61 -3.4
272,958 - HMPREF1058_RS18035 0.61 -3.7
272,963 - HMPREF1058_RS18035 0.61 -2.9
273,066 + HMPREF1058_RS18035 0.76 -2.1
273,066 + HMPREF1058_RS18035 0.76 -2.0
273,066 + HMPREF1058_RS18035 0.76 -2.2
273,067 - HMPREF1058_RS18035 0.76 -2.4
273,113 - HMPREF1058_RS18035 0.83 -2.7
273,137 - HMPREF1058_RS18035 0.86 -1.4
273,173 + -2.5
273,174 - -3.3
273,176 - -2.4
273,176 - -4.0
273,183 - -2.0
273,204 - -3.8
273,217 - -1.2

Or see this region's nucleotide sequence