Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15315 and HMPREF1058_RS15310 are separated by 145 nucleotides HMPREF1058_RS15310 and HMPREF1058_RS15305 are separated by 95 nucleotides
HMPREF1058_RS15315: HMPREF1058_RS15315 - FimB/Mfa2 family fimbrial subunit, at 953,209 to 954,177
_RS15315
HMPREF1058_RS15310: HMPREF1058_RS15310 - Mfa1 family fimbria major subunit, at 954,323 to 955,858
_RS15310
HMPREF1058_RS15305: HMPREF1058_RS15305 - hypothetical protein, at 955,954 to 957,402
_RS15305
Position (kb) 954
955
956 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 953.338 kb on - strand at 953.434 kb on + strand, within HMPREF1058_RS15315 at 953.556 kb on + strand, within HMPREF1058_RS15315 at 953.565 kb on - strand, within HMPREF1058_RS15315 at 953.627 kb on - strand, within HMPREF1058_RS15315 at 953.744 kb on + strand, within HMPREF1058_RS15315 at 953.846 kb on + strand, within HMPREF1058_RS15315 at 954.112 kb on - strand at 954.112 kb on - strand at 954.118 kb on + strand at 954.119 kb on - strand at 954.119 kb on - strand at 954.155 kb on + strand at 954.155 kb on + strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.156 kb on - strand at 954.184 kb on + strand at 954.204 kb on + strand at 954.222 kb on + strand at 954.276 kb on + strand at 954.277 kb on - strand at 954.280 kb on + strand at 954.288 kb on + strand at 954.290 kb on + strand at 954.325 kb on - strand at 954.387 kb on + strand at 954.388 kb on - strand at 954.528 kb on + strand, within HMPREF1058_RS15310 at 954.529 kb on - strand, within HMPREF1058_RS15310 at 954.533 kb on - strand, within HMPREF1058_RS15310 at 954.538 kb on + strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.631 kb on - strand, within HMPREF1058_RS15310 at 954.634 kb on + strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.635 kb on - strand, within HMPREF1058_RS15310 at 954.636 kb on + strand, within HMPREF1058_RS15310 at 954.690 kb on + strand, within HMPREF1058_RS15310 at 954.694 kb on + strand, within HMPREF1058_RS15310 at 954.737 kb on - strand, within HMPREF1058_RS15310 at 954.739 kb on - strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.801 kb on + strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.802 kb on - strand, within HMPREF1058_RS15310 at 954.834 kb on + strand, within HMPREF1058_RS15310 at 954.862 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 954.954 kb on + strand, within HMPREF1058_RS15310 at 955.063 kb on + strand, within HMPREF1058_RS15310 at 955.064 kb on - strand, within HMPREF1058_RS15310 at 955.096 kb on - strand, within HMPREF1058_RS15310 at 955.121 kb on - strand, within HMPREF1058_RS15310 at 955.149 kb on + strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.150 kb on - strand, within HMPREF1058_RS15310 at 955.179 kb on + strand, within HMPREF1058_RS15310 at 955.440 kb on + strand, within HMPREF1058_RS15310 at 955.440 kb on + strand, within HMPREF1058_RS15310 at 955.441 kb on - strand, within HMPREF1058_RS15310 at 955.654 kb on + strand, within HMPREF1058_RS15310 at 955.732 kb on + strand at 955.795 kb on + strand at 955.818 kb on - strand at 955.873 kb on - strand at 955.899 kb on - strand at 955.914 kb on + strand at 955.914 kb on + strand at 956.016 kb on + strand at 956.020 kb on - strand at 956.063 kb on - strand at 956.105 kb on + strand, within HMPREF1058_RS15305 at 956.106 kb on - strand, within HMPREF1058_RS15305 at 956.110 kb on + strand, within HMPREF1058_RS15305 at 956.110 kb on + strand, within HMPREF1058_RS15305 at 956.127 kb on - strand, within HMPREF1058_RS15305 at 956.177 kb on + strand, within HMPREF1058_RS15305 at 956.177 kb on + strand, within HMPREF1058_RS15305 at 956.178 kb on - strand, within HMPREF1058_RS15305 at 956.178 kb on - strand, within HMPREF1058_RS15305 at 956.179 kb on + strand, within HMPREF1058_RS15305 at 956.210 kb on + strand, within HMPREF1058_RS15305 at 956.229 kb on - strand, within HMPREF1058_RS15305 at 956.262 kb on + strand, within HMPREF1058_RS15305 at 956.387 kb on - strand, within HMPREF1058_RS15305 at 956.430 kb on + strand, within HMPREF1058_RS15305 at 956.431 kb on - strand, within HMPREF1058_RS15305 at 956.458 kb on - strand, within HMPREF1058_RS15305 at 956.458 kb on - strand, within HMPREF1058_RS15305 at 956.460 kb on - strand, within HMPREF1058_RS15305 at 956.474 kb on - strand, within HMPREF1058_RS15305 at 956.560 kb on - strand, within HMPREF1058_RS15305 at 956.566 kb on + strand, within HMPREF1058_RS15305 at 956.571 kb on - strand, within HMPREF1058_RS15305 at 956.574 kb on - strand, within HMPREF1058_RS15305 at 956.584 kb on - strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.652 kb on + strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.653 kb on - strand, within HMPREF1058_RS15305 at 956.656 kb on + strand, within HMPREF1058_RS15305 at 956.784 kb on + strand, within HMPREF1058_RS15305 at 956.785 kb on - strand, within HMPREF1058_RS15305 at 956.844 kb on - strand, within HMPREF1058_RS15305 at 956.848 kb on - strand, within HMPREF1058_RS15305 at 956.848 kb on - strand, within HMPREF1058_RS15305
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 953,338 - +0.6 953,434 + HMPREF1058_RS15315 0.23 -1.5 953,556 + HMPREF1058_RS15315 0.36 +3.4 953,565 - HMPREF1058_RS15315 0.37 -1.9 953,627 - HMPREF1058_RS15315 0.43 -2.4 953,744 + HMPREF1058_RS15315 0.55 -0.4 953,846 + HMPREF1058_RS15315 0.66 +0.1 954,112 - -3.1 954,112 - -3.5 954,118 + -0.7 954,119 - -3.2 954,119 - -0.8 954,155 + +0.1 954,155 + -1.1 954,156 - -2.3 954,156 - +0.2 954,156 - -0.9 954,184 + +1.1 954,204 + -2.2 954,222 + +1.7 954,276 + +1.7 954,277 - -2.7 954,280 + -0.2 954,288 + +0.4 954,290 + -0.1 954,325 - -1.5 954,387 + -0.9 954,388 - -3.6 954,528 + HMPREF1058_RS15310 0.13 -2.0 954,529 - HMPREF1058_RS15310 0.13 -2.7 954,533 - HMPREF1058_RS15310 0.14 -3.9 954,538 + HMPREF1058_RS15310 0.14 -0.2 954,631 - HMPREF1058_RS15310 0.20 -2.0 954,631 - HMPREF1058_RS15310 0.20 -2.8 954,634 + HMPREF1058_RS15310 0.20 -0.3 954,635 - HMPREF1058_RS15310 0.20 -1.7 954,635 - HMPREF1058_RS15310 0.20 -1.7 954,635 - HMPREF1058_RS15310 0.20 -0.6 954,636 + HMPREF1058_RS15310 0.20 -2.1 954,690 + HMPREF1058_RS15310 0.24 -1.0 954,694 + HMPREF1058_RS15310 0.24 -0.0 954,737 - HMPREF1058_RS15310 0.27 -2.2 954,739 - HMPREF1058_RS15310 0.27 -3.0 954,801 + HMPREF1058_RS15310 0.31 -1.0 954,801 + HMPREF1058_RS15310 0.31 -0.4 954,802 - HMPREF1058_RS15310 0.31 -4.5 954,802 - HMPREF1058_RS15310 0.31 -3.2 954,802 - HMPREF1058_RS15310 0.31 -1.6 954,834 + HMPREF1058_RS15310 0.33 +0.8 954,862 + HMPREF1058_RS15310 0.35 -1.9 954,954 + HMPREF1058_RS15310 0.41 -0.2 954,954 + HMPREF1058_RS15310 0.41 -0.5 954,954 + HMPREF1058_RS15310 0.41 -0.3 955,063 + HMPREF1058_RS15310 0.48 +0.1 955,064 - HMPREF1058_RS15310 0.48 -3.7 955,096 - HMPREF1058_RS15310 0.50 -0.4 955,121 - HMPREF1058_RS15310 0.52 -1.1 955,149 + HMPREF1058_RS15310 0.54 -0.2 955,150 - HMPREF1058_RS15310 0.54 -2.6 955,150 - HMPREF1058_RS15310 0.54 -2.5 955,150 - HMPREF1058_RS15310 0.54 -2.8 955,179 + HMPREF1058_RS15310 0.56 +0.6 955,440 + HMPREF1058_RS15310 0.73 -0.2 955,440 + HMPREF1058_RS15310 0.73 -0.1 955,441 - HMPREF1058_RS15310 0.73 -2.7 955,654 + HMPREF1058_RS15310 0.87 -0.5 955,732 + +1.5 955,795 + +0.5 955,818 - -2.1 955,873 - -2.2 955,899 - -3.5 955,914 + -1.2 955,914 + -0.6 956,016 + +1.2 956,020 - -2.3 956,063 - -2.6 956,105 + HMPREF1058_RS15305 0.10 -0.4 956,106 - HMPREF1058_RS15305 0.10 -4.2 956,110 + HMPREF1058_RS15305 0.11 +0.4 956,110 + HMPREF1058_RS15305 0.11 -0.8 956,127 - HMPREF1058_RS15305 0.12 -2.8 956,177 + HMPREF1058_RS15305 0.15 -1.2 956,177 + HMPREF1058_RS15305 0.15 +1.2 956,178 - HMPREF1058_RS15305 0.15 -1.2 956,178 - HMPREF1058_RS15305 0.15 -0.8 956,179 + HMPREF1058_RS15305 0.16 +0.7 956,210 + HMPREF1058_RS15305 0.18 -1.9 956,229 - HMPREF1058_RS15305 0.19 -1.8 956,262 + HMPREF1058_RS15305 0.21 -0.3 956,387 - HMPREF1058_RS15305 0.30 -0.4 956,430 + HMPREF1058_RS15305 0.33 +0.5 956,431 - HMPREF1058_RS15305 0.33 -3.1 956,458 - HMPREF1058_RS15305 0.35 -3.1 956,458 - HMPREF1058_RS15305 0.35 -2.8 956,460 - HMPREF1058_RS15305 0.35 -3.0 956,474 - HMPREF1058_RS15305 0.36 -3.7 956,560 - HMPREF1058_RS15305 0.42 +0.6 956,566 + HMPREF1058_RS15305 0.42 -0.4 956,571 - HMPREF1058_RS15305 0.43 -1.5 956,574 - HMPREF1058_RS15305 0.43 -1.9 956,584 - HMPREF1058_RS15305 0.43 -1.4 956,652 + HMPREF1058_RS15305 0.48 -1.8 956,652 + HMPREF1058_RS15305 0.48 +0.1 956,652 + HMPREF1058_RS15305 0.48 +0.1 956,652 + HMPREF1058_RS15305 0.48 -0.7 956,653 - HMPREF1058_RS15305 0.48 -1.9 956,653 - HMPREF1058_RS15305 0.48 -1.4 956,653 - HMPREF1058_RS15305 0.48 -1.7 956,656 + HMPREF1058_RS15305 0.48 -0.7 956,784 + HMPREF1058_RS15305 0.57 +0.1 956,785 - HMPREF1058_RS15305 0.57 -2.9 956,844 - HMPREF1058_RS15305 0.61 -1.2 956,848 - HMPREF1058_RS15305 0.62 -1.6 956,848 - HMPREF1058_RS15305 0.62 -0.1
Or see this region's nucleotide sequence