Experiment: Sucrose 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03400 and HMPREF1058_RS03395 are separated by 7 nucleotides HMPREF1058_RS03395 and HMPREF1058_RS03390 are separated by 13 nucleotides HMPREF1058_RS03390 and HMPREF1058_RS03385 are separated by 20 nucleotides HMPREF1058_RS03385 and HMPREF1058_RS03380 are separated by 3 nucleotides
HMPREF1058_RS03400: HMPREF1058_RS03400 - long-chain fatty acid--CoA ligase, at 288,693 to 289,907
_RS03400
HMPREF1058_RS03395: HMPREF1058_RS03395 - acyl carrier protein, at 289,915 to 290,139
_RS03395
HMPREF1058_RS03390: HMPREF1058_RS03390 - GNAT family N-acetyltransferase, at 290,153 to 290,626
_RS03390
HMPREF1058_RS03385: HMPREF1058_RS03385 - ATP-grasp domain-containing protein, at 290,647 to 291,852
_RS03385
HMPREF1058_RS03380: HMPREF1058_RS03380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 291,856 to 292,965
_RS03380
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 289.761 kb on - strand, within HMPREF1058_RS03400 at 289.822 kb on - strand at 289.831 kb on + strand at 289.831 kb on + strand at 289.832 kb on - strand at 289.832 kb on - strand at 289.841 kb on + strand at 289.841 kb on + strand at 289.842 kb on - strand at 289.845 kb on + strand at 289.855 kb on - strand at 289.868 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.872 kb on - strand at 289.902 kb on - strand at 290.073 kb on + strand, within HMPREF1058_RS03395 at 290.113 kb on - strand, within HMPREF1058_RS03395 at 290.126 kb on - strand at 290.219 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.252 kb on + strand, within HMPREF1058_RS03390 at 290.253 kb on - strand, within HMPREF1058_RS03390 at 290.311 kb on - strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.335 kb on + strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.354 kb on - strand, within HMPREF1058_RS03390 at 290.440 kb on + strand, within HMPREF1058_RS03390 at 290.502 kb on + strand, within HMPREF1058_RS03390 at 290.503 kb on - strand, within HMPREF1058_RS03390 at 290.508 kb on - strand, within HMPREF1058_RS03390 at 290.525 kb on - strand, within HMPREF1058_RS03390 at 290.611 kb on + strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.612 kb on - strand at 290.613 kb on + strand at 290.615 kb on + strand at 290.618 kb on + strand at 290.746 kb on - strand at 290.803 kb on + strand, within HMPREF1058_RS03385 at 290.811 kb on - strand, within HMPREF1058_RS03385 at 290.827 kb on - strand, within HMPREF1058_RS03385 at 290.835 kb on - strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.897 kb on + strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 290.898 kb on - strand, within HMPREF1058_RS03385 at 291.035 kb on + strand, within HMPREF1058_RS03385 at 291.036 kb on - strand, within HMPREF1058_RS03385 at 291.055 kb on + strand, within HMPREF1058_RS03385 at 291.056 kb on - strand, within HMPREF1058_RS03385 at 291.073 kb on - strand, within HMPREF1058_RS03385 at 291.148 kb on - strand, within HMPREF1058_RS03385 at 291.310 kb on - strand, within HMPREF1058_RS03385 at 291.324 kb on + strand, within HMPREF1058_RS03385 at 291.498 kb on + strand, within HMPREF1058_RS03385 at 291.547 kb on + strand, within HMPREF1058_RS03385 at 291.583 kb on - strand, within HMPREF1058_RS03385 at 291.652 kb on + strand, within HMPREF1058_RS03385 at 291.695 kb on - strand, within HMPREF1058_RS03385 at 291.696 kb on + strand, within HMPREF1058_RS03385 at 291.724 kb on - strand, within HMPREF1058_RS03385 at 291.729 kb on + strand, within HMPREF1058_RS03385 at 291.753 kb on - strand at 291.880 kb on - strand at 291.946 kb on - strand at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.010 kb on - strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.025 kb on + strand, within HMPREF1058_RS03380 at 292.088 kb on + strand, within HMPREF1058_RS03380 at 292.199 kb on - strand, within HMPREF1058_RS03380 at 292.350 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.401 kb on + strand, within HMPREF1058_RS03380 at 292.406 kb on + strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.407 kb on - strand, within HMPREF1058_RS03380 at 292.441 kb on - strand, within HMPREF1058_RS03380 at 292.503 kb on - strand, within HMPREF1058_RS03380 at 292.520 kb on + strand, within HMPREF1058_RS03380 at 292.521 kb on - strand, within HMPREF1058_RS03380 at 292.571 kb on - strand, within HMPREF1058_RS03380 at 292.639 kb on - strand, within HMPREF1058_RS03380 at 292.803 kb on + strand, within HMPREF1058_RS03380
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 20 mM (C) remove 289,761 - HMPREF1058_RS03400 0.88 +1.6 289,822 - -3.0 289,831 + +0.2 289,831 + +1.2 289,832 - -0.1 289,832 - -2.9 289,841 + +1.3 289,841 + +0.6 289,842 - -0.0 289,845 + +0.1 289,855 - -1.6 289,868 - +0.1 289,872 - +1.5 289,872 - -0.1 289,872 - +1.8 289,872 - +0.6 289,872 - +0.6 289,902 - -2.9 290,073 + HMPREF1058_RS03395 0.70 +0.6 290,113 - HMPREF1058_RS03395 0.88 -1.4 290,126 - +0.3 290,219 + HMPREF1058_RS03390 0.14 +0.7 290,252 + HMPREF1058_RS03390 0.21 -0.4 290,252 + HMPREF1058_RS03390 0.21 +1.8 290,253 - HMPREF1058_RS03390 0.21 -0.2 290,311 - HMPREF1058_RS03390 0.33 +0.8 290,335 + HMPREF1058_RS03390 0.38 -1.1 290,335 + HMPREF1058_RS03390 0.38 -1.4 290,354 - HMPREF1058_RS03390 0.42 +0.7 290,354 - HMPREF1058_RS03390 0.42 +0.8 290,354 - HMPREF1058_RS03390 0.42 -0.2 290,440 + HMPREF1058_RS03390 0.61 +1.4 290,502 + HMPREF1058_RS03390 0.74 -1.1 290,503 - HMPREF1058_RS03390 0.74 +0.1 290,508 - HMPREF1058_RS03390 0.75 +0.8 290,525 - HMPREF1058_RS03390 0.78 +1.2 290,611 + +0.7 290,612 - -0.1 290,612 - +0.5 290,612 - -0.1 290,613 + +1.2 290,615 + +3.6 290,618 + +2.6 290,746 - +2.1 290,803 + HMPREF1058_RS03385 0.13 +0.9 290,811 - HMPREF1058_RS03385 0.14 +0.0 290,827 - HMPREF1058_RS03385 0.15 +2.0 290,835 - HMPREF1058_RS03385 0.16 +0.7 290,897 + HMPREF1058_RS03385 0.21 -0.3 290,897 + HMPREF1058_RS03385 0.21 +0.9 290,898 - HMPREF1058_RS03385 0.21 -1.1 290,898 - HMPREF1058_RS03385 0.21 +0.6 291,035 + HMPREF1058_RS03385 0.32 +0.5 291,036 - HMPREF1058_RS03385 0.32 +1.2 291,055 + HMPREF1058_RS03385 0.34 -0.6 291,056 - HMPREF1058_RS03385 0.34 -1.4 291,073 - HMPREF1058_RS03385 0.35 -0.3 291,148 - HMPREF1058_RS03385 0.42 +0.1 291,310 - HMPREF1058_RS03385 0.55 +0.5 291,324 + HMPREF1058_RS03385 0.56 +1.8 291,498 + HMPREF1058_RS03385 0.71 +0.5 291,547 + HMPREF1058_RS03385 0.75 -1.3 291,583 - HMPREF1058_RS03385 0.78 +0.4 291,652 + HMPREF1058_RS03385 0.83 -0.6 291,695 - HMPREF1058_RS03385 0.87 -1.2 291,696 + HMPREF1058_RS03385 0.87 +0.2 291,724 - HMPREF1058_RS03385 0.89 +0.2 291,729 + HMPREF1058_RS03385 0.90 -1.3 291,753 - +0.2 291,880 - -0.4 291,946 - +0.1 292,010 - HMPREF1058_RS03380 0.14 +0.5 292,010 - HMPREF1058_RS03380 0.14 -1.0 292,025 + HMPREF1058_RS03380 0.15 +1.6 292,025 + HMPREF1058_RS03380 0.15 +1.9 292,088 + HMPREF1058_RS03380 0.21 -0.4 292,199 - HMPREF1058_RS03380 0.31 +0.3 292,350 + HMPREF1058_RS03380 0.45 +3.6 292,401 + HMPREF1058_RS03380 0.49 -1.2 292,401 + HMPREF1058_RS03380 0.49 +0.3 292,401 + HMPREF1058_RS03380 0.49 -2.1 292,406 + HMPREF1058_RS03380 0.50 +0.6 292,407 - HMPREF1058_RS03380 0.50 -0.0 292,407 - HMPREF1058_RS03380 0.50 -0.8 292,441 - HMPREF1058_RS03380 0.53 +0.6 292,503 - HMPREF1058_RS03380 0.58 -0.6 292,520 + HMPREF1058_RS03380 0.60 +0.2 292,521 - HMPREF1058_RS03380 0.60 -0.1 292,571 - HMPREF1058_RS03380 0.64 +0.4 292,639 - HMPREF1058_RS03380 0.71 -1.0 292,803 + HMPREF1058_RS03380 0.85 -1.6
Or see this region's nucleotide sequence