Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS01105

Experiment: Sucrose 20 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS01110 and HMPREF1058_RS01105 are separated by 285 nucleotidesHMPREF1058_RS01105 and HMPREF1058_RS01100 are separated by 127 nucleotides HMPREF1058_RS01110: HMPREF1058_RS01110 - IS256 family transposase, at 207,821 to 209,035 _RS01110 HMPREF1058_RS01105: HMPREF1058_RS01105 - hypothetical protein, at 209,321 to 209,773 _RS01105 HMPREF1058_RS01100: HMPREF1058_RS01100 - DUF4377 domain-containing protein, at 209,901 to 210,764 _RS01100 Position (kb) 209 210Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 208.335 kb on - strand, within HMPREF1058_RS01110at 208.336 kb on + strand, within HMPREF1058_RS01110at 208.380 kb on - strand, within HMPREF1058_RS01110at 208.380 kb on - strand, within HMPREF1058_RS01110at 208.411 kb on + strand, within HMPREF1058_RS01110at 208.412 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.431 kb on - strand, within HMPREF1058_RS01110at 208.433 kb on - strand, within HMPREF1058_RS01110at 208.434 kb on + strand, within HMPREF1058_RS01110at 208.435 kb on - strand, within HMPREF1058_RS01110at 208.505 kb on - strand, within HMPREF1058_RS01110at 208.510 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.519 kb on + strand, within HMPREF1058_RS01110at 208.520 kb on - strand, within HMPREF1058_RS01110at 208.520 kb on - strand, within HMPREF1058_RS01110at 208.594 kb on - strand, within HMPREF1058_RS01110at 208.619 kb on + strand, within HMPREF1058_RS01110at 208.620 kb on - strand, within HMPREF1058_RS01110at 208.799 kb on + strand, within HMPREF1058_RS01110at 208.823 kb on - strand, within HMPREF1058_RS01110at 208.823 kb on - strand, within HMPREF1058_RS01110at 208.823 kb on - strand, within HMPREF1058_RS01110at 208.824 kb on + strand, within HMPREF1058_RS01110at 208.825 kb on - strand, within HMPREF1058_RS01110at 208.825 kb on - strand, within HMPREF1058_RS01110at 208.825 kb on - strand, within HMPREF1058_RS01110at 208.903 kb on + strand, within HMPREF1058_RS01110at 208.903 kb on + strand, within HMPREF1058_RS01110at 208.925 kb on + strandat 208.943 kb on - strandat 209.033 kb on + strandat 209.159 kb on + strandat 209.181 kb on - strandat 209.253 kb on - strandat 209.264 kb on + strandat 209.315 kb on - strandat 209.315 kb on - strandat 209.315 kb on - strandat 209.341 kb on - strandat 209.359 kb on - strandat 209.372 kb on - strand, within HMPREF1058_RS01105at 209.423 kb on - strand, within HMPREF1058_RS01105at 209.434 kb on + strand, within HMPREF1058_RS01105at 209.453 kb on - strand, within HMPREF1058_RS01105at 209.463 kb on + strand, within HMPREF1058_RS01105at 209.464 kb on - strand, within HMPREF1058_RS01105at 209.487 kb on + strand, within HMPREF1058_RS01105at 209.546 kb on + strand, within HMPREF1058_RS01105at 209.561 kb on - strand, within HMPREF1058_RS01105at 209.562 kb on + strand, within HMPREF1058_RS01105at 209.563 kb on - strand, within HMPREF1058_RS01105at 209.642 kb on + strand, within HMPREF1058_RS01105at 209.642 kb on + strand, within HMPREF1058_RS01105at 209.643 kb on - strand, within HMPREF1058_RS01105at 209.644 kb on + strand, within HMPREF1058_RS01105at 209.644 kb on + strand, within HMPREF1058_RS01105at 209.645 kb on - strand, within HMPREF1058_RS01105at 209.651 kb on + strand, within HMPREF1058_RS01105at 209.652 kb on - strand, within HMPREF1058_RS01105at 209.655 kb on - strand, within HMPREF1058_RS01105at 209.655 kb on - strand, within HMPREF1058_RS01105at 209.683 kb on + strand, within HMPREF1058_RS01105at 209.685 kb on + strand, within HMPREF1058_RS01105at 209.685 kb on + strand, within HMPREF1058_RS01105at 209.685 kb on + strand, within HMPREF1058_RS01105at 209.792 kb on - strandat 209.808 kb on + strandat 209.808 kb on + strandat 209.815 kb on - strandat 209.929 kb on + strandat 210.010 kb on - strand, within HMPREF1058_RS01100at 210.011 kb on + strand, within HMPREF1058_RS01100at 210.012 kb on - strand, within HMPREF1058_RS01100at 210.012 kb on - strand, within HMPREF1058_RS01100at 210.065 kb on + strand, within HMPREF1058_RS01100at 210.074 kb on - strand, within HMPREF1058_RS01100at 210.074 kb on - strand, within HMPREF1058_RS01100at 210.082 kb on + strand, within HMPREF1058_RS01100at 210.083 kb on - strand, within HMPREF1058_RS01100at 210.084 kb on + strand, within HMPREF1058_RS01100at 210.085 kb on - strand, within HMPREF1058_RS01100at 210.165 kb on + strand, within HMPREF1058_RS01100at 210.165 kb on + strand, within HMPREF1058_RS01100at 210.166 kb on - strand, within HMPREF1058_RS01100at 210.167 kb on + strand, within HMPREF1058_RS01100at 210.168 kb on - strand, within HMPREF1058_RS01100at 210.204 kb on - strand, within HMPREF1058_RS01100at 210.238 kb on + strand, within HMPREF1058_RS01100at 210.310 kb on - strand, within HMPREF1058_RS01100at 210.311 kb on + strand, within HMPREF1058_RS01100at 210.311 kb on + strand, within HMPREF1058_RS01100at 210.311 kb on + strand, within HMPREF1058_RS01100at 210.312 kb on - strand, within HMPREF1058_RS01100at 210.312 kb on - strand, within HMPREF1058_RS01100at 210.312 kb on - strand, within HMPREF1058_RS01100at 210.312 kb on - strand, within HMPREF1058_RS01100at 210.312 kb on - strand, within HMPREF1058_RS01100at 210.319 kb on + strand, within HMPREF1058_RS01100at 210.340 kb on - strand, within HMPREF1058_RS01100at 210.343 kb on + strand, within HMPREF1058_RS01100at 210.343 kb on + strand, within HMPREF1058_RS01100at 210.343 kb on + strand, within HMPREF1058_RS01100at 210.343 kb on + strand, within HMPREF1058_RS01100at 210.422 kb on + strand, within HMPREF1058_RS01100at 210.422 kb on + strand, within HMPREF1058_RS01100at 210.423 kb on - strand, within HMPREF1058_RS01100at 210.458 kb on + strand, within HMPREF1058_RS01100at 210.498 kb on - strand, within HMPREF1058_RS01100at 210.503 kb on - strand, within HMPREF1058_RS01100at 210.640 kb on + strand, within HMPREF1058_RS01100at 210.708 kb on + strandat 210.747 kb on - strandat 210.747 kb on - strandat 210.755 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 20 mM (C)
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208,335 - HMPREF1058_RS01110 0.42 +0.9
208,336 + HMPREF1058_RS01110 0.42 -1.0
208,380 - HMPREF1058_RS01110 0.46 +1.4
208,380 - HMPREF1058_RS01110 0.46 -0.8
208,411 + HMPREF1058_RS01110 0.49 +2.4
208,412 - HMPREF1058_RS01110 0.49 -2.0
208,431 - HMPREF1058_RS01110 0.50 -1.2
208,431 - HMPREF1058_RS01110 0.50 -1.0
208,431 - HMPREF1058_RS01110 0.50 +3.0
208,433 - HMPREF1058_RS01110 0.50 -1.0
208,434 + HMPREF1058_RS01110 0.50 +0.1
208,435 - HMPREF1058_RS01110 0.51 +0.4
208,505 - HMPREF1058_RS01110 0.56 -1.4
208,510 + HMPREF1058_RS01110 0.57 -3.2
208,519 + HMPREF1058_RS01110 0.57 -0.2
208,519 + HMPREF1058_RS01110 0.57 +0.2
208,519 + HMPREF1058_RS01110 0.57 -0.8
208,520 - HMPREF1058_RS01110 0.58 +0.2
208,520 - HMPREF1058_RS01110 0.58 -0.4
208,594 - HMPREF1058_RS01110 0.64 -2.0
208,619 + HMPREF1058_RS01110 0.66 +1.6
208,620 - HMPREF1058_RS01110 0.66 +0.9
208,799 + HMPREF1058_RS01110 0.80 -0.3
208,823 - HMPREF1058_RS01110 0.82 +0.2
208,823 - HMPREF1058_RS01110 0.82 -2.0
208,823 - HMPREF1058_RS01110 0.82 -2.2
208,824 + HMPREF1058_RS01110 0.83 +0.6
208,825 - HMPREF1058_RS01110 0.83 +0.7
208,825 - HMPREF1058_RS01110 0.83 +1.0
208,825 - HMPREF1058_RS01110 0.83 +0.0
208,903 + HMPREF1058_RS01110 0.89 +1.3
208,903 + HMPREF1058_RS01110 0.89 +1.1
208,925 + -0.9
208,943 - +1.0
209,033 + +0.5
209,159 + +0.2
209,181 - +0.2
209,253 - +0.8
209,264 + +0.4
209,315 - -1.0
209,315 - +0.6
209,315 - -1.0
209,341 - +1.6
209,359 - +1.2
209,372 - HMPREF1058_RS01105 0.11 +0.4
209,423 - HMPREF1058_RS01105 0.23 -0.1
209,434 + HMPREF1058_RS01105 0.25 +0.9
209,453 - HMPREF1058_RS01105 0.29 -0.0
209,463 + HMPREF1058_RS01105 0.31 +0.2
209,464 - HMPREF1058_RS01105 0.32 +1.8
209,487 + HMPREF1058_RS01105 0.37 -0.0
209,546 + HMPREF1058_RS01105 0.50 -2.2
209,561 - HMPREF1058_RS01105 0.53 -1.5
209,562 + HMPREF1058_RS01105 0.53 -1.9
209,563 - HMPREF1058_RS01105 0.53 -0.5
209,642 + HMPREF1058_RS01105 0.71 +0.2
209,642 + HMPREF1058_RS01105 0.71 -0.5
209,643 - HMPREF1058_RS01105 0.71 +0.2
209,644 + HMPREF1058_RS01105 0.71 +0.2
209,644 + HMPREF1058_RS01105 0.71 +2.4
209,645 - HMPREF1058_RS01105 0.72 -0.1
209,651 + HMPREF1058_RS01105 0.73 +0.5
209,652 - HMPREF1058_RS01105 0.73 -0.2
209,655 - HMPREF1058_RS01105 0.74 +0.3
209,655 - HMPREF1058_RS01105 0.74 +0.2
209,683 + HMPREF1058_RS01105 0.80 +1.3
209,685 + HMPREF1058_RS01105 0.80 -0.1
209,685 + HMPREF1058_RS01105 0.80 -0.8
209,685 + HMPREF1058_RS01105 0.80 -0.4
209,792 - -1.1
209,808 + -1.4
209,808 + -2.2
209,815 - -1.9
209,929 + -2.2
210,010 - HMPREF1058_RS01100 0.13 -1.2
210,011 + HMPREF1058_RS01100 0.13 -1.7
210,012 - HMPREF1058_RS01100 0.13 -1.6
210,012 - HMPREF1058_RS01100 0.13 -0.9
210,065 + HMPREF1058_RS01100 0.19 +0.5
210,074 - HMPREF1058_RS01100 0.20 +1.6
210,074 - HMPREF1058_RS01100 0.20 +2.7
210,082 + HMPREF1058_RS01100 0.21 +0.4
210,083 - HMPREF1058_RS01100 0.21 +1.8
210,084 + HMPREF1058_RS01100 0.21 -1.4
210,085 - HMPREF1058_RS01100 0.21 -0.6
210,165 + HMPREF1058_RS01100 0.31 -0.1
210,165 + HMPREF1058_RS01100 0.31 -0.1
210,166 - HMPREF1058_RS01100 0.31 -0.3
210,167 + HMPREF1058_RS01100 0.31 +0.9
210,168 - HMPREF1058_RS01100 0.31 +1.1
210,204 - HMPREF1058_RS01100 0.35 +0.5
210,238 + HMPREF1058_RS01100 0.39 -1.3
210,310 - HMPREF1058_RS01100 0.47 -1.6
210,311 + HMPREF1058_RS01100 0.47 +1.0
210,311 + HMPREF1058_RS01100 0.47 -0.5
210,311 + HMPREF1058_RS01100 0.47 -0.2
210,312 - HMPREF1058_RS01100 0.48 +1.8
210,312 - HMPREF1058_RS01100 0.48 +1.1
210,312 - HMPREF1058_RS01100 0.48 -0.4
210,312 - HMPREF1058_RS01100 0.48 -2.8
210,312 - HMPREF1058_RS01100 0.48 -0.5
210,319 + HMPREF1058_RS01100 0.48 -1.6
210,340 - HMPREF1058_RS01100 0.51 -0.4
210,343 + HMPREF1058_RS01100 0.51 -1.0
210,343 + HMPREF1058_RS01100 0.51 +1.1
210,343 + HMPREF1058_RS01100 0.51 +0.6
210,343 + HMPREF1058_RS01100 0.51 +0.4
210,422 + HMPREF1058_RS01100 0.60 -1.4
210,422 + HMPREF1058_RS01100 0.60 +0.0
210,423 - HMPREF1058_RS01100 0.60 +0.7
210,458 + HMPREF1058_RS01100 0.64 -1.1
210,498 - HMPREF1058_RS01100 0.69 -0.5
210,503 - HMPREF1058_RS01100 0.70 -2.1
210,640 + HMPREF1058_RS01100 0.86 +0.1
210,708 + +2.0
210,747 - -3.5
210,747 - -0.4
210,755 + +0.9

Or see this region's nucleotide sequence