Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4773

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4771 and Ac3H11_4772 are separated by 90 nucleotidesAc3H11_4772 and Ac3H11_4773 are separated by 92 nucleotidesAc3H11_4773 and Ac3H11_4774 overlap by 4 nucleotidesAc3H11_4774 and Ac3H11_4775 are separated by 5 nucleotides Ac3H11_4771 - Glutamate 5-kinase (EC 2.7.2.11), at 71,445 to 72,599 _4771 Ac3H11_4772 - Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-), at 72,690 to 73,367 _4772 Ac3H11_4773 - Prolyl-tRNA synthetase (EC 6.1.1.15), bacterial type, at 73,460 to 75,202 _4773 Ac3H11_4774 - FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 75,199 to 75,912 _4774 Ac3H11_4775 - Putative membrane protein, at 75,918 to 77,246 _4775 Position (kb) 73 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.474 kb on + strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.475 kb on - strand, within Ac3H11_4771at 72.614 kb on + strandat 72.614 kb on + strandat 72.614 kb on + strandat 72.615 kb on - strandat 72.615 kb on - strandat 72.615 kb on - strandat 72.615 kb on - strandat 72.642 kb on + strandat 72.643 kb on - strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.657 kb on + strandat 72.658 kb on - strandat 72.658 kb on - strandat 72.658 kb on - strandat 72.658 kb on - strandat 72.658 kb on - strandat 72.658 kb on - strandat 72.823 kb on + strand, within Ac3H11_4772at 72.823 kb on + strand, within Ac3H11_4772at 72.823 kb on + strand, within Ac3H11_4772at 72.823 kb on + strand, within Ac3H11_4772at 72.823 kb on + strand, within Ac3H11_4772at 72.823 kb on + strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.824 kb on - strand, within Ac3H11_4772at 72.877 kb on + strand, within Ac3H11_4772at 72.877 kb on + strand, within Ac3H11_4772at 72.877 kb on + strand, within Ac3H11_4772at 72.877 kb on + strand, within Ac3H11_4772at 72.877 kb on + strand, within Ac3H11_4772at 72.878 kb on - strand, within Ac3H11_4772at 72.878 kb on - strand, within Ac3H11_4772at 72.878 kb on - strand, within Ac3H11_4772at 72.878 kb on - strand, within Ac3H11_4772at 72.878 kb on - strand, within Ac3H11_4772at 72.908 kb on - strand, within Ac3H11_4772at 72.937 kb on + strand, within Ac3H11_4772at 72.938 kb on - strand, within Ac3H11_4772at 72.938 kb on - strand, within Ac3H11_4772at 72.982 kb on + strand, within Ac3H11_4772at 72.982 kb on + strand, within Ac3H11_4772at 73.093 kb on + strand, within Ac3H11_4772at 73.094 kb on - strand, within Ac3H11_4772at 73.094 kb on - strand, within Ac3H11_4772at 73.120 kb on + strand, within Ac3H11_4772at 73.120 kb on + strand, within Ac3H11_4772at 73.367 kb on + strandat 73.400 kb on + strandat 73.400 kb on + strandat 73.400 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.198 kb on + strandat 75.199 kb on - strandat 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.466 kb on + strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.467 kb on - strand, within Ac3H11_4774at 75.556 kb on + strand, within Ac3H11_4774at 75.556 kb on + strand, within Ac3H11_4774at 75.557 kb on + strand, within Ac3H11_4774at 75.557 kb on - strand, within Ac3H11_4774at 75.557 kb on - strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.661 kb on + strand, within Ac3H11_4774at 75.662 kb on - strand, within Ac3H11_4774at 75.662 kb on - strand, within Ac3H11_4774at 75.662 kb on - strand, within Ac3H11_4774at 75.662 kb on - strand, within Ac3H11_4774at 75.662 kb on - strand, within Ac3H11_4774at 75.769 kb on + strand, within Ac3H11_4774at 75.769 kb on + strand, within Ac3H11_4774at 75.769 kb on + strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.770 kb on - strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.814 kb on + strand, within Ac3H11_4774at 75.815 kb on - strand, within Ac3H11_4774at 75.815 kb on - strand, within Ac3H11_4774at 75.815 kb on - strand, within Ac3H11_4774at 75.919 kb on + strandat 75.920 kb on - strandat 75.944 kb on + strandat 75.944 kb on + strandat 75.944 kb on + strandat 75.944 kb on + strandat 75.944 kb on + strandat 75.944 kb on + strandat 75.945 kb on - strandat 75.945 kb on - strandat 75.945 kb on - strandat 75.945 kb on - strandat 75.945 kb on - strandat 75.997 kb on + strandat 75.997 kb on + strandat 76.105 kb on + strand, within Ac3H11_4775at 76.105 kb on + strand, within Ac3H11_4775

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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72,474 + Ac3H11_4771 0.89 -0.7
72,474 + Ac3H11_4771 0.89 +0.5
72,474 + Ac3H11_4771 0.89 -0.7
72,474 + Ac3H11_4771 0.89 +0.2
72,474 + Ac3H11_4771 0.89 +0.4
72,474 + Ac3H11_4771 0.89 -1.1
72,474 + Ac3H11_4771 0.89 -0.1
72,474 + Ac3H11_4771 0.89 -0.2
72,474 + Ac3H11_4771 0.89 -1.0
72,474 + Ac3H11_4771 0.89 +0.3
72,474 + Ac3H11_4771 0.89 +0.6
72,474 + Ac3H11_4771 0.89 -1.2
72,474 + Ac3H11_4771 0.89 +0.6
72,475 - Ac3H11_4771 0.89 -0.1
72,475 - Ac3H11_4771 0.89 +0.3
72,475 - Ac3H11_4771 0.89 +0.3
72,475 - Ac3H11_4771 0.89 -1.2
72,475 - Ac3H11_4771 0.89 -0.2
72,475 - Ac3H11_4771 0.89 -1.0
72,475 - Ac3H11_4771 0.89 +0.2
72,475 - Ac3H11_4771 0.89 -0.9
72,475 - Ac3H11_4771 0.89 -0.5
72,475 - Ac3H11_4771 0.89 -0.8
72,614 + -0.5
72,614 + +0.9
72,614 + +0.2
72,615 - +0.4
72,615 - +0.4
72,615 - -1.6
72,615 - +1.9
72,642 + +0.5
72,643 - -0.2
72,657 + +0.8
72,657 + +0.6
72,657 + +1.0
72,657 + +2.0
72,657 + +0.1
72,657 + +0.5
72,657 + +1.4
72,657 + +1.6
72,657 + -0.0
72,657 + -0.1
72,657 + +1.2
72,658 - +0.8
72,658 - +0.7
72,658 - +1.1
72,658 - +0.8
72,658 - +0.2
72,658 - +0.8
72,823 + Ac3H11_4772 0.20 +1.9
72,823 + Ac3H11_4772 0.20 +0.6
72,823 + Ac3H11_4772 0.20 +0.7
72,823 + Ac3H11_4772 0.20 -0.1
72,823 + Ac3H11_4772 0.20 +0.2
72,823 + Ac3H11_4772 0.20 +1.6
72,824 - Ac3H11_4772 0.20 +1.1
72,824 - Ac3H11_4772 0.20 +1.2
72,824 - Ac3H11_4772 0.20 +1.0
72,824 - Ac3H11_4772 0.20 +0.5
72,824 - Ac3H11_4772 0.20 +0.6
72,824 - Ac3H11_4772 0.20 +0.8
72,824 - Ac3H11_4772 0.20 +0.9
72,824 - Ac3H11_4772 0.20 +0.0
72,824 - Ac3H11_4772 0.20 +0.4
72,824 - Ac3H11_4772 0.20 +1.6
72,824 - Ac3H11_4772 0.20 +1.4
72,824 - Ac3H11_4772 0.20 +1.7
72,877 + Ac3H11_4772 0.28 +0.5
72,877 + Ac3H11_4772 0.28 +1.3
72,877 + Ac3H11_4772 0.28 +1.5
72,877 + Ac3H11_4772 0.28 +1.7
72,877 + Ac3H11_4772 0.28 +1.1
72,878 - Ac3H11_4772 0.28 +1.0
72,878 - Ac3H11_4772 0.28 +1.2
72,878 - Ac3H11_4772 0.28 +0.2
72,878 - Ac3H11_4772 0.28 +0.7
72,878 - Ac3H11_4772 0.28 +1.8
72,908 - Ac3H11_4772 0.32 +1.3
72,937 + Ac3H11_4772 0.36 -1.3
72,938 - Ac3H11_4772 0.37 -0.2
72,938 - Ac3H11_4772 0.37 +2.1
72,982 + Ac3H11_4772 0.43 +0.1
72,982 + Ac3H11_4772 0.43 +2.2
73,093 + Ac3H11_4772 0.59 +1.6
73,094 - Ac3H11_4772 0.60 +0.3
73,094 - Ac3H11_4772 0.60 -0.2
73,120 + Ac3H11_4772 0.63 -0.5
73,120 + Ac3H11_4772 0.63 +0.9
73,367 + +2.5
73,400 + -1.9
73,400 + +0.6
73,400 + -0.3
75,198 + -0.0
75,198 + -0.1
75,198 + -0.3
75,198 + +0.5
75,198 + -1.4
75,198 + -0.6
75,198 + -1.4
75,198 + -0.4
75,198 + -0.4
75,199 - +0.2
75,466 + Ac3H11_4774 0.37 +1.1
75,466 + Ac3H11_4774 0.37 +1.1
75,466 + Ac3H11_4774 0.37 +0.9
75,466 + Ac3H11_4774 0.37 +1.0
75,466 + Ac3H11_4774 0.37 +1.2
75,466 + Ac3H11_4774 0.37 +1.2
75,466 + Ac3H11_4774 0.37 +0.6
75,466 + Ac3H11_4774 0.37 +1.0
75,466 + Ac3H11_4774 0.37 +1.1
75,466 + Ac3H11_4774 0.37 +1.9
75,466 + Ac3H11_4774 0.37 +1.6
75,466 + Ac3H11_4774 0.37 +0.5
75,466 + Ac3H11_4774 0.37 +1.1
75,467 - Ac3H11_4774 0.38 +1.7
75,467 - Ac3H11_4774 0.38 +0.8
75,467 - Ac3H11_4774 0.38 +1.5
75,467 - Ac3H11_4774 0.38 +1.6
75,467 - Ac3H11_4774 0.38 +0.9
75,467 - Ac3H11_4774 0.38 +1.3
75,467 - Ac3H11_4774 0.38 -1.6
75,467 - Ac3H11_4774 0.38 +1.2
75,467 - Ac3H11_4774 0.38 +0.5
75,467 - Ac3H11_4774 0.38 +1.5
75,556 + Ac3H11_4774 0.50 +0.9
75,556 + Ac3H11_4774 0.50 +1.4
75,557 + Ac3H11_4774 0.50 +0.4
75,557 - Ac3H11_4774 0.50 +0.2
75,557 - Ac3H11_4774 0.50 +1.1
75,661 + Ac3H11_4774 0.65 +1.3
75,661 + Ac3H11_4774 0.65 +1.3
75,661 + Ac3H11_4774 0.65 +1.1
75,661 + Ac3H11_4774 0.65 +2.2
75,661 + Ac3H11_4774 0.65 +1.2
75,661 + Ac3H11_4774 0.65 +1.2
75,661 + Ac3H11_4774 0.65 +1.1
75,661 + Ac3H11_4774 0.65 +1.6
75,661 + Ac3H11_4774 0.65 +0.7
75,661 + Ac3H11_4774 0.65 +1.2
75,661 + Ac3H11_4774 0.65 +1.1
75,661 + Ac3H11_4774 0.65 +0.3
75,662 - Ac3H11_4774 0.65 +1.7
75,662 - Ac3H11_4774 0.65 +0.8
75,662 - Ac3H11_4774 0.65 +1.4
75,662 - Ac3H11_4774 0.65 +1.2
75,662 - Ac3H11_4774 0.65 +1.8
75,769 + Ac3H11_4774 0.80 +0.7
75,769 + Ac3H11_4774 0.80 +0.8
75,769 + Ac3H11_4774 0.80 +1.9
75,770 - Ac3H11_4774 0.80 +1.5
75,770 - Ac3H11_4774 0.80 +2.1
75,770 - Ac3H11_4774 0.80 +1.1
75,770 - Ac3H11_4774 0.80 +1.7
75,770 - Ac3H11_4774 0.80 +1.4
75,770 - Ac3H11_4774 0.80 +1.0
75,814 + Ac3H11_4774 0.86 +1.0
75,814 + Ac3H11_4774 0.86 +1.5
75,814 + Ac3H11_4774 0.86 +1.6
75,814 + Ac3H11_4774 0.86 +0.8
75,814 + Ac3H11_4774 0.86 +1.3
75,814 + Ac3H11_4774 0.86 +1.3
75,815 - Ac3H11_4774 0.86 +0.5
75,815 - Ac3H11_4774 0.86 +1.3
75,815 - Ac3H11_4774 0.86 +1.6
75,919 + -2.3
75,920 - +1.0
75,944 + +0.8
75,944 + -0.1
75,944 + -0.7
75,944 + -0.3
75,944 + +0.2
75,944 + -0.6
75,945 - +0.1
75,945 - -0.1
75,945 - -0.1
75,945 - +1.0
75,945 - -0.1
75,997 + -0.2
75,997 + +0.1
76,105 + Ac3H11_4775 0.14 -1.4
76,105 + Ac3H11_4775 0.14 -1.5

Or see this region's nucleotide sequence