Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_448 and Ac3H11_449 are separated by 398 nucleotides Ac3H11_449 and Ac3H11_450 overlap by 1 nucleotides Ac3H11_450 and Ac3H11_451 overlap by 4 nucleotides
Ac3H11_448 - Sensory box/GGDEF family protein, at 135,698 to 138,649
_448
Ac3H11_449 - Putative hemolysin, at 139,048 to 139,689
_449
Ac3H11_450 - Ser/Thr protein phosphatase family protein, UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.54) homolog, at 139,689 to 140,561
_450
Ac3H11_451 - Glycosyltransferase, at 140,558 to 141,649
_451
Position (kb) 139
140 Strain fitness (log2 ratio) -2
-1
0
1
2 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.102 kb on + strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.103 kb on - strand, within Ac3H11_448 at 138.147 kb on + strand, within Ac3H11_448 at 138.147 kb on + strand, within Ac3H11_448 at 138.147 kb on + strand, within Ac3H11_448 at 138.148 kb on - strand, within Ac3H11_448 at 138.148 kb on - strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.188 kb on + strand, within Ac3H11_448 at 138.189 kb on - strand, within Ac3H11_448 at 138.189 kb on - strand, within Ac3H11_448 at 138.189 kb on - strand, within Ac3H11_448 at 138.189 kb on - strand, within Ac3H11_448 at 138.189 kb on - strand, within Ac3H11_448 at 138.320 kb on + strand, within Ac3H11_448 at 138.320 kb on + strand, within Ac3H11_448 at 138.320 kb on + strand, within Ac3H11_448 at 138.321 kb on - strand, within Ac3H11_448 at 138.321 kb on - strand, within Ac3H11_448 at 138.363 kb on + strand at 138.364 kb on - strand at 138.364 kb on - strand at 138.434 kb on + strand at 138.435 kb on - strand at 138.520 kb on + strand at 138.520 kb on + strand at 138.521 kb on - strand at 138.521 kb on - strand at 138.673 kb on - strand at 138.673 kb on - strand at 138.693 kb on + strand at 138.693 kb on + strand at 138.693 kb on + strand at 138.693 kb on + strand at 138.694 kb on - strand at 138.694 kb on - strand at 139.160 kb on - strand, within Ac3H11_449 at 139.205 kb on - strand, within Ac3H11_449 at 139.205 kb on - strand, within Ac3H11_449 at 139.205 kb on - strand, within Ac3H11_449 at 139.205 kb on - strand, within Ac3H11_449 at 139.445 kb on + strand, within Ac3H11_449 at 139.446 kb on - strand, within Ac3H11_449 at 139.446 kb on - strand, within Ac3H11_449 at 139.475 kb on - strand, within Ac3H11_449 at 139.475 kb on - strand, within Ac3H11_449 at 139.559 kb on - strand, within Ac3H11_449 at 139.890 kb on + strand, within Ac3H11_450 at 139.890 kb on + strand, within Ac3H11_450 at 139.891 kb on - strand, within Ac3H11_450 at 139.891 kb on - strand, within Ac3H11_450 at 140.096 kb on + strand, within Ac3H11_450 at 140.096 kb on + strand, within Ac3H11_450 at 140.097 kb on - strand, within Ac3H11_450 at 140.097 kb on - strand, within Ac3H11_450 at 140.097 kb on - strand, within Ac3H11_450 at 140.097 kb on - strand, within Ac3H11_450 at 140.179 kb on - strand, within Ac3H11_450 at 140.196 kb on + strand, within Ac3H11_450 at 140.197 kb on - strand, within Ac3H11_450 at 140.260 kb on - strand, within Ac3H11_450 at 140.277 kb on + strand, within Ac3H11_450 at 140.277 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.310 kb on + strand, within Ac3H11_450 at 140.311 kb on - strand, within Ac3H11_450 at 140.311 kb on - strand, within Ac3H11_450 at 140.311 kb on - strand, within Ac3H11_450 at 140.311 kb on - strand, within Ac3H11_450 at 140.311 kb on - strand, within Ac3H11_450 at 140.374 kb on + strand, within Ac3H11_450 at 140.375 kb on - strand, within Ac3H11_450 at 140.375 kb on - strand, within Ac3H11_450 at 140.424 kb on + strand, within Ac3H11_450 at 140.425 kb on - strand, within Ac3H11_450 at 140.425 kb on - strand, within Ac3H11_450
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 138,102 + Ac3H11_448 0.81 -1.8 138,102 + Ac3H11_448 0.81 +0.3 138,102 + Ac3H11_448 0.81 +0.2 138,102 + Ac3H11_448 0.81 -0.5 138,102 + Ac3H11_448 0.81 +0.2 138,102 + Ac3H11_448 0.81 +0.4 138,102 + Ac3H11_448 0.81 +0.7 138,103 - Ac3H11_448 0.81 +0.6 138,103 - Ac3H11_448 0.81 +0.1 138,103 - Ac3H11_448 0.81 +0.6 138,103 - Ac3H11_448 0.81 -0.1 138,103 - Ac3H11_448 0.81 +1.0 138,103 - Ac3H11_448 0.81 -0.0 138,147 + Ac3H11_448 0.83 -0.3 138,147 + Ac3H11_448 0.83 -0.6 138,147 + Ac3H11_448 0.83 +0.7 138,148 - Ac3H11_448 0.83 -0.0 138,148 - Ac3H11_448 0.83 -0.4 138,188 + Ac3H11_448 0.84 -0.7 138,188 + Ac3H11_448 0.84 +0.5 138,188 + Ac3H11_448 0.84 +1.1 138,188 + Ac3H11_448 0.84 +0.1 138,188 + Ac3H11_448 0.84 +0.8 138,188 + Ac3H11_448 0.84 +0.5 138,188 + Ac3H11_448 0.84 +0.6 138,189 - Ac3H11_448 0.84 -1.7 138,189 - Ac3H11_448 0.84 -0.5 138,189 - Ac3H11_448 0.84 +0.6 138,189 - Ac3H11_448 0.84 +0.1 138,189 - Ac3H11_448 0.84 -0.0 138,320 + Ac3H11_448 0.89 -0.1 138,320 + Ac3H11_448 0.89 -0.1 138,320 + Ac3H11_448 0.89 +0.5 138,321 - Ac3H11_448 0.89 -0.1 138,321 - Ac3H11_448 0.89 -1.0 138,363 + +0.4 138,364 - +1.4 138,364 - -0.5 138,434 + +0.8 138,435 - -0.8 138,520 + -0.6 138,520 + -0.5 138,521 - +0.1 138,521 - +0.2 138,673 - +0.1 138,673 - -0.2 138,693 + -1.1 138,693 + -0.1 138,693 + +0.4 138,693 + +0.2 138,694 - +0.6 138,694 - +0.4 139,160 - Ac3H11_449 0.17 +1.1 139,205 - Ac3H11_449 0.24 -0.4 139,205 - Ac3H11_449 0.24 -0.2 139,205 - Ac3H11_449 0.24 -0.2 139,205 - Ac3H11_449 0.24 +0.4 139,445 + Ac3H11_449 0.62 +0.0 139,446 - Ac3H11_449 0.62 -0.0 139,446 - Ac3H11_449 0.62 +1.5 139,475 - Ac3H11_449 0.67 +0.4 139,475 - Ac3H11_449 0.67 +0.6 139,559 - Ac3H11_449 0.80 -0.1 139,890 + Ac3H11_450 0.23 +1.9 139,890 + Ac3H11_450 0.23 -0.5 139,891 - Ac3H11_450 0.23 +0.8 139,891 - Ac3H11_450 0.23 +0.8 140,096 + Ac3H11_450 0.47 -1.7 140,096 + Ac3H11_450 0.47 -2.1 140,097 - Ac3H11_450 0.47 -0.2 140,097 - Ac3H11_450 0.47 +0.5 140,097 - Ac3H11_450 0.47 +0.2 140,097 - Ac3H11_450 0.47 +0.1 140,179 - Ac3H11_450 0.56 -0.6 140,196 + Ac3H11_450 0.58 -1.0 140,197 - Ac3H11_450 0.58 -0.6 140,260 - Ac3H11_450 0.65 +0.7 140,277 + Ac3H11_450 0.67 -0.7 140,277 + Ac3H11_450 0.67 +1.0 140,310 + Ac3H11_450 0.71 +0.5 140,310 + Ac3H11_450 0.71 -0.5 140,310 + Ac3H11_450 0.71 +0.1 140,310 + Ac3H11_450 0.71 -0.5 140,310 + Ac3H11_450 0.71 +1.1 140,310 + Ac3H11_450 0.71 -0.8 140,310 + Ac3H11_450 0.71 -0.1 140,311 - Ac3H11_450 0.71 -0.2 140,311 - Ac3H11_450 0.71 +0.1 140,311 - Ac3H11_450 0.71 -0.2 140,311 - Ac3H11_450 0.71 +0.4 140,311 - Ac3H11_450 0.71 +0.1 140,374 + Ac3H11_450 0.78 -1.0 140,375 - Ac3H11_450 0.79 -0.1 140,375 - Ac3H11_450 0.79 +1.5 140,424 + Ac3H11_450 0.84 -0.1 140,425 - Ac3H11_450 0.84 -0.2 140,425 - Ac3H11_450 0.84 +1.4
Or see this region's nucleotide sequence