Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4061 and Ac3H11_4062 overlap by 4 nucleotides Ac3H11_4062 and Ac3H11_4063 are separated by 120 nucleotides Ac3H11_4063 and Ac3H11_4064 are separated by 850 nucleotides
Ac3H11_4061 - Cyanophycin synthase (EC 6.3.2.29)(EC 6.3.2.30), at 307,312 to 309,891
_4061
Ac3H11_4062 - Conserved uncharacterized protein CreA, at 309,888 to 310,394
_4062
Ac3H11_4063 - 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain, at 310,515 to 311,162
_4063
Ac3H11_4064 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 312,013 to 313,524
_4064
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 309.652 kb on + strand at 309.653 kb on - strand at 309.653 kb on - strand at 310.050 kb on + strand, within Ac3H11_4062 at 310.083 kb on + strand, within Ac3H11_4062 at 310.083 kb on + strand, within Ac3H11_4062 at 310.083 kb on + strand, within Ac3H11_4062 at 310.083 kb on + strand, within Ac3H11_4062 at 310.084 kb on - strand, within Ac3H11_4062 at 310.084 kb on - strand, within Ac3H11_4062 at 310.084 kb on - strand, within Ac3H11_4062 at 310.084 kb on - strand, within Ac3H11_4062 at 310.084 kb on - strand, within Ac3H11_4062 at 310.112 kb on + strand, within Ac3H11_4062 at 310.112 kb on + strand, within Ac3H11_4062 at 310.112 kb on + strand, within Ac3H11_4062 at 310.112 kb on + strand, within Ac3H11_4062 at 310.113 kb on - strand, within Ac3H11_4062 at 310.305 kb on + strand, within Ac3H11_4062 at 310.305 kb on + strand, within Ac3H11_4062 at 310.306 kb on - strand, within Ac3H11_4062 at 310.392 kb on + strand at 310.393 kb on - strand at 310.393 kb on - strand at 310.393 kb on - strand at 310.453 kb on - strand at 310.492 kb on + strand at 310.499 kb on + strand at 310.508 kb on + strand at 310.510 kb on + strand at 310.636 kb on + strand, within Ac3H11_4063 at 310.636 kb on + strand, within Ac3H11_4063 at 310.637 kb on - strand, within Ac3H11_4063 at 310.777 kb on + strand, within Ac3H11_4063 at 310.777 kb on + strand, within Ac3H11_4063 at 310.864 kb on + strand, within Ac3H11_4063 at 310.864 kb on + strand, within Ac3H11_4063 at 310.864 kb on + strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.865 kb on - strand, within Ac3H11_4063 at 310.967 kb on - strand, within Ac3H11_4063 at 310.967 kb on - strand, within Ac3H11_4063 at 311.175 kb on + strand at 311.175 kb on + strand at 311.197 kb on + strand at 311.197 kb on + strand at 311.197 kb on + strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.198 kb on - strand at 311.241 kb on + strand at 311.242 kb on - strand at 311.257 kb on + strand at 311.257 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.268 kb on + strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.269 kb on - strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.270 kb on + strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.271 kb on - strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.397 kb on + strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.398 kb on - strand at 311.468 kb on - strand at 311.473 kb on + strand at 311.505 kb on + strand at 311.505 kb on + strand at 311.506 kb on - strand at 311.506 kb on - strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.520 kb on + strand at 311.521 kb on - strand at 311.521 kb on - strand at 311.521 kb on - strand at 311.551 kb on + strand at 311.634 kb on - strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.690 kb on + strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.691 kb on - strand at 311.765 kb on + strand at 311.766 kb on - strand at 311.766 kb on - strand at 311.774 kb on - strand at 311.853 kb on + strand at 311.896 kb on - strand at 311.896 kb on - strand at 311.911 kb on + strand at 311.911 kb on + strand at 311.912 kb on - strand at 311.982 kb on + strand at 311.983 kb on - strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.990 kb on + strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 311.991 kb on - strand at 312.008 kb on + strand at 312.008 kb on + strand at 312.009 kb on - strand at 312.009 kb on - strand at 312.014 kb on + strand at 312.014 kb on + strand at 312.014 kb on + strand at 312.015 kb on - strand at 312.015 kb on - strand at 312.053 kb on + strand at 312.053 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 309,652 + +2.2 309,653 - +1.3 309,653 - +1.7 310,050 + Ac3H11_4062 0.32 -0.3 310,083 + Ac3H11_4062 0.38 -0.4 310,083 + Ac3H11_4062 0.38 +0.2 310,083 + Ac3H11_4062 0.38 -0.1 310,083 + Ac3H11_4062 0.38 -0.5 310,084 - Ac3H11_4062 0.39 -0.8 310,084 - Ac3H11_4062 0.39 -0.9 310,084 - Ac3H11_4062 0.39 +0.3 310,084 - Ac3H11_4062 0.39 -1.0 310,084 - Ac3H11_4062 0.39 +0.2 310,112 + Ac3H11_4062 0.44 -0.7 310,112 + Ac3H11_4062 0.44 -0.3 310,112 + Ac3H11_4062 0.44 -1.6 310,112 + Ac3H11_4062 0.44 +2.5 310,113 - Ac3H11_4062 0.44 -0.7 310,305 + Ac3H11_4062 0.82 -0.1 310,305 + Ac3H11_4062 0.82 -0.4 310,306 - Ac3H11_4062 0.82 -1.6 310,392 + -1.1 310,393 - -0.5 310,393 - +0.3 310,393 - -0.1 310,453 - -0.1 310,492 + -0.6 310,499 + +2.0 310,508 + -0.3 310,510 + +0.4 310,636 + Ac3H11_4063 0.19 -0.6 310,636 + Ac3H11_4063 0.19 -1.2 310,637 - Ac3H11_4063 0.19 -1.2 310,777 + Ac3H11_4063 0.40 -0.1 310,777 + Ac3H11_4063 0.40 -0.9 310,864 + Ac3H11_4063 0.54 -0.3 310,864 + Ac3H11_4063 0.54 -0.0 310,864 + Ac3H11_4063 0.54 -0.1 310,865 - Ac3H11_4063 0.54 +1.0 310,865 - Ac3H11_4063 0.54 -1.5 310,865 - Ac3H11_4063 0.54 -0.8 310,865 - Ac3H11_4063 0.54 -0.2 310,865 - Ac3H11_4063 0.54 -1.0 310,865 - Ac3H11_4063 0.54 +0.4 310,865 - Ac3H11_4063 0.54 -1.3 310,967 - Ac3H11_4063 0.70 +1.5 310,967 - Ac3H11_4063 0.70 -2.5 311,175 + -1.8 311,175 + -0.2 311,197 + -0.4 311,197 + -0.7 311,197 + -1.3 311,198 - -1.9 311,198 - +0.5 311,198 - -1.6 311,198 - -0.6 311,198 - +0.4 311,241 + -0.3 311,242 - +0.7 311,257 + -2.2 311,257 + +0.1 311,268 + -0.8 311,268 + +0.1 311,268 + +0.6 311,268 + -0.3 311,268 + +0.6 311,268 + -1.2 311,268 + -0.4 311,268 + -0.1 311,269 - +0.7 311,269 - +1.6 311,269 - -2.0 311,269 - -0.7 311,269 - +0.2 311,269 - +0.2 311,270 + +0.2 311,270 + +0.3 311,270 + -1.0 311,270 + +0.0 311,270 + -0.7 311,270 + +0.5 311,270 + +0.0 311,270 + +0.2 311,270 + +1.2 311,271 - +0.1 311,271 - -0.5 311,271 - -1.0 311,271 - -0.4 311,271 - +0.4 311,271 - +0.8 311,271 - -0.9 311,271 - +0.4 311,271 - -0.4 311,271 - -0.7 311,271 - +0.4 311,397 + -0.6 311,397 + +0.4 311,397 + -0.7 311,397 + -0.7 311,397 + +1.9 311,397 + -1.7 311,397 + -0.7 311,397 + +1.0 311,397 + -0.1 311,398 - -0.3 311,398 - +0.3 311,398 - -0.2 311,398 - +2.5 311,468 - +0.5 311,473 + -0.0 311,505 + +0.0 311,505 + -0.2 311,506 - -1.1 311,506 - -0.6 311,520 + +0.4 311,520 + +1.6 311,520 + -0.9 311,520 + -0.6 311,520 + -0.9 311,520 + -0.1 311,521 - -0.5 311,521 - +0.6 311,521 - +0.2 311,551 + -0.0 311,634 - +0.7 311,690 + -0.6 311,690 + -0.9 311,690 + -0.4 311,690 + +0.1 311,690 + +0.4 311,691 - +0.2 311,691 - +0.2 311,691 - -0.2 311,691 - +0.8 311,765 + +0.3 311,766 - +0.2 311,766 - -0.9 311,774 - +0.2 311,853 + -0.3 311,896 - -0.8 311,896 - +0.1 311,911 + -0.0 311,911 + +3.5 311,912 - -0.7 311,982 + -0.5 311,983 - -0.1 311,990 + +0.1 311,990 + -0.1 311,990 + +0.4 311,990 + -0.2 311,990 + -0.2 311,991 - -0.4 311,991 - -0.3 311,991 - -1.2 311,991 - +0.1 311,991 - -0.3 311,991 - +0.5 312,008 + +0.8 312,008 + -1.1 312,009 - -0.2 312,009 - -0.4 312,014 + +0.2 312,014 + -0.7 312,014 + -0.4 312,015 - +0.1 312,015 - +0.2 312,053 + +0.8 312,053 + -1.1
Or see this region's nucleotide sequence