Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3737

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3736 and Ac3H11_3737 are separated by 70 nucleotidesAc3H11_3737 and Ac3H11_3738 overlap by 4 nucleotides Ac3H11_3736 - Homoserine O-acetyltransferase (EC 2.3.1.31), at 94,801 to 95,868 _3736 Ac3H11_3737 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 95,939 to 96,649 _3737 Ac3H11_3738 - FIG00641944: hypothetical protein, at 96,646 to 97,923 _3738 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 95.039 kb on + strand, within Ac3H11_3736at 95.040 kb on - strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.063 kb on + strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.064 kb on - strand, within Ac3H11_3736at 95.065 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.231 kb on + strand, within Ac3H11_3736at 95.232 kb on - strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.480 kb on + strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.481 kb on - strand, within Ac3H11_3736at 95.486 kb on + strand, within Ac3H11_3736at 95.703 kb on - strand, within Ac3H11_3736at 95.703 kb on - strand, within Ac3H11_3736at 95.787 kb on - strandat 95.805 kb on + strandat 95.805 kb on + strandat 95.805 kb on + strandat 95.805 kb on + strandat 95.805 kb on + strandat 95.805 kb on + strandat 95.806 kb on - strandat 96.240 kb on + strand, within Ac3H11_3737at 96.240 kb on + strand, within Ac3H11_3737at 96.387 kb on + strand, within Ac3H11_3737at 96.407 kb on + strand, within Ac3H11_3737at 96.407 kb on + strand, within Ac3H11_3737at 96.408 kb on - strand, within Ac3H11_3737at 96.408 kb on - strand, within Ac3H11_3737at 96.516 kb on + strand, within Ac3H11_3737at 96.517 kb on - strand, within Ac3H11_3737at 96.564 kb on + strand, within Ac3H11_3737at 96.564 kb on + strand, within Ac3H11_3737at 96.564 kb on + strand, within Ac3H11_3737at 96.564 kb on + strand, within Ac3H11_3737at 96.565 kb on - strand, within Ac3H11_3737at 96.565 kb on - strand, within Ac3H11_3737at 96.565 kb on - strand, within Ac3H11_3737at 96.641 kb on - strandat 96.983 kb on + strand, within Ac3H11_3738at 96.983 kb on + strand, within Ac3H11_3738at 96.983 kb on + strand, within Ac3H11_3738at 96.984 kb on - strand, within Ac3H11_3738at 96.984 kb on - strand, within Ac3H11_3738at 96.984 kb on - strand, within Ac3H11_3738at 96.984 kb on - strand, within Ac3H11_3738at 97.237 kb on + strand, within Ac3H11_3738

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
95,039 + Ac3H11_3736 0.22 -0.3
95,040 - Ac3H11_3736 0.22 +0.1
95,063 + Ac3H11_3736 0.25 -0.2
95,063 + Ac3H11_3736 0.25 -0.1
95,063 + Ac3H11_3736 0.25 +1.2
95,063 + Ac3H11_3736 0.25 -0.0
95,063 + Ac3H11_3736 0.25 +0.2
95,063 + Ac3H11_3736 0.25 -0.5
95,063 + Ac3H11_3736 0.25 -2.0
95,064 - Ac3H11_3736 0.25 -1.0
95,064 - Ac3H11_3736 0.25 +0.4
95,064 - Ac3H11_3736 0.25 -0.3
95,065 + Ac3H11_3736 0.25 -0.9
95,231 + Ac3H11_3736 0.40 +0.5
95,231 + Ac3H11_3736 0.40 +0.1
95,231 + Ac3H11_3736 0.40 -1.0
95,231 + Ac3H11_3736 0.40 +0.2
95,231 + Ac3H11_3736 0.40 -0.2
95,231 + Ac3H11_3736 0.40 -0.0
95,231 + Ac3H11_3736 0.40 +0.2
95,231 + Ac3H11_3736 0.40 -1.7
95,232 - Ac3H11_3736 0.40 -0.4
95,480 + Ac3H11_3736 0.64 -1.7
95,480 + Ac3H11_3736 0.64 +0.1
95,480 + Ac3H11_3736 0.64 -1.2
95,481 - Ac3H11_3736 0.64 -1.9
95,481 - Ac3H11_3736 0.64 +0.2
95,481 - Ac3H11_3736 0.64 -0.0
95,481 - Ac3H11_3736 0.64 +0.1
95,486 + Ac3H11_3736 0.64 -0.7
95,703 - Ac3H11_3736 0.84 -0.3
95,703 - Ac3H11_3736 0.84 -0.7
95,787 - +0.4
95,805 + +0.3
95,805 + +0.5
95,805 + -0.4
95,805 + +0.1
95,805 + +0.3
95,805 + -0.6
95,806 - -1.4
96,240 + Ac3H11_3737 0.42 +0.8
96,240 + Ac3H11_3737 0.42 -0.2
96,387 + Ac3H11_3737 0.63 +0.4
96,407 + Ac3H11_3737 0.66 -0.9
96,407 + Ac3H11_3737 0.66 -0.0
96,408 - Ac3H11_3737 0.66 -1.0
96,408 - Ac3H11_3737 0.66 -0.1
96,516 + Ac3H11_3737 0.81 -0.1
96,517 - Ac3H11_3737 0.81 -0.4
96,564 + Ac3H11_3737 0.88 -0.4
96,564 + Ac3H11_3737 0.88 -0.3
96,564 + Ac3H11_3737 0.88 -1.1
96,564 + Ac3H11_3737 0.88 +0.7
96,565 - Ac3H11_3737 0.88 -0.6
96,565 - Ac3H11_3737 0.88 -0.3
96,565 - Ac3H11_3737 0.88 -1.7
96,641 - -0.0
96,983 + Ac3H11_3738 0.26 -0.4
96,983 + Ac3H11_3738 0.26 +0.5
96,983 + Ac3H11_3738 0.26 -1.5
96,984 - Ac3H11_3738 0.26 -0.0
96,984 - Ac3H11_3738 0.26 -0.1
96,984 - Ac3H11_3738 0.26 +0.4
96,984 - Ac3H11_3738 0.26 -1.0
97,237 + Ac3H11_3738 0.46 +1.3

Or see this region's nucleotide sequence