Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3685

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_3684 and Ac3H11_3743 are separated by 212 nucleotidesAc3H11_3743 and Ac3H11_3685 are separated by 19 nucleotidesAc3H11_3685 and Ac3H11_3686 overlap by 4 nucleotidesAc3H11_3686 and Ac3H11_3687 are separated by 119 nucleotides Ac3H11_3684 - hypothetical protein, at 41,751 to 43,076 _3684 Ac3H11_3743 - tRNA-Ser-TGA, at 43,289 to 43,373 _3743 Ac3H11_3685 - Urease accessory protein UreG, at 43,393 to 44,076 _3685 Ac3H11_3686 - Urease accessory protein UreF, at 44,073 to 44,783 _3686 Ac3H11_3687 - Urease accessory protein UreE, at 44,903 to 45,553 _3687 Position (kb) 43 44 45Strain fitness (log2 ratio) -2 -1 0 1 2 3at 42.423 kb on + strand, within Ac3H11_3684at 42.423 kb on + strand, within Ac3H11_3684at 42.424 kb on - strand, within Ac3H11_3684at 42.424 kb on - strand, within Ac3H11_3684at 42.494 kb on + strand, within Ac3H11_3684at 42.494 kb on + strand, within Ac3H11_3684at 42.494 kb on + strand, within Ac3H11_3684at 42.512 kb on + strand, within Ac3H11_3684at 42.513 kb on - strand, within Ac3H11_3684at 42.518 kb on + strand, within Ac3H11_3684at 42.530 kb on + strand, within Ac3H11_3684at 42.530 kb on + strand, within Ac3H11_3684at 42.531 kb on - strand, within Ac3H11_3684at 42.579 kb on + strand, within Ac3H11_3684at 42.580 kb on - strand, within Ac3H11_3684at 42.580 kb on - strand, within Ac3H11_3684at 42.617 kb on + strand, within Ac3H11_3684at 42.617 kb on + strand, within Ac3H11_3684at 42.618 kb on - strand, within Ac3H11_3684at 42.618 kb on - strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.628 kb on + strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.629 kb on - strand, within Ac3H11_3684at 42.633 kb on - strand, within Ac3H11_3684at 42.647 kb on + strand, within Ac3H11_3684at 42.647 kb on + strand, within Ac3H11_3684at 42.647 kb on + strand, within Ac3H11_3684at 42.647 kb on + strand, within Ac3H11_3684at 42.647 kb on + strand, within Ac3H11_3684at 42.672 kb on + strand, within Ac3H11_3684at 42.673 kb on - strand, within Ac3H11_3684at 42.691 kb on + strand, within Ac3H11_3684at 42.691 kb on + strand, within Ac3H11_3684at 42.691 kb on + strand, within Ac3H11_3684at 42.691 kb on + strand, within Ac3H11_3684at 42.692 kb on - strand, within Ac3H11_3684at 42.692 kb on - strand, within Ac3H11_3684at 42.759 kb on + strand, within Ac3H11_3684at 42.759 kb on + strand, within Ac3H11_3684at 42.921 kb on + strand, within Ac3H11_3684at 42.922 kb on - strand, within Ac3H11_3684at 42.922 kb on - strand, within Ac3H11_3684at 43.038 kb on + strandat 43.038 kb on + strandat 43.039 kb on - strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.043 kb on - strandat 43.043 kb on - strandat 43.096 kb on + strandat 43.097 kb on - strandat 43.097 kb on - strandat 43.150 kb on + strandat 43.151 kb on - strandat 43.186 kb on - strandat 43.189 kb on + strandat 43.189 kb on + strandat 43.189 kb on + strandat 43.190 kb on - strandat 43.190 kb on - strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.205 kb on + strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.206 kb on - strandat 43.224 kb on + strandat 43.224 kb on + strandat 43.224 kb on + strandat 43.228 kb on + strandat 43.229 kb on - strandat 43.229 kb on - strandat 43.229 kb on - strandat 43.229 kb on - strandat 43.229 kb on - strandat 43.241 kb on - strandat 43.241 kb on - strandat 43.394 kb on + strandat 43.394 kb on + strandat 43.522 kb on - strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.673 kb on + strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.674 kb on - strand, within Ac3H11_3685at 43.910 kb on + strand, within Ac3H11_3685at 43.910 kb on + strand, within Ac3H11_3685at 43.910 kb on + strand, within Ac3H11_3685at 43.911 kb on - strand, within Ac3H11_3685at 43.940 kb on + strand, within Ac3H11_3685at 44.096 kb on - strandat 44.096 kb on - strandat 44.362 kb on + strand, within Ac3H11_3686at 44.363 kb on - strand, within Ac3H11_3686at 44.363 kb on - strand, within Ac3H11_3686

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
42,423 + Ac3H11_3684 0.51 -0.7
42,423 + Ac3H11_3684 0.51 +0.3
42,424 - Ac3H11_3684 0.51 +1.3
42,424 - Ac3H11_3684 0.51 -0.2
42,494 + Ac3H11_3684 0.56 +0.4
42,494 + Ac3H11_3684 0.56 +0.1
42,494 + Ac3H11_3684 0.56 -0.8
42,512 + Ac3H11_3684 0.57 -1.3
42,513 - Ac3H11_3684 0.57 -0.1
42,518 + Ac3H11_3684 0.58 -0.5
42,530 + Ac3H11_3684 0.59 +1.4
42,530 + Ac3H11_3684 0.59 -1.0
42,531 - Ac3H11_3684 0.59 +1.2
42,579 + Ac3H11_3684 0.62 +2.1
42,580 - Ac3H11_3684 0.63 +0.7
42,580 - Ac3H11_3684 0.63 -0.0
42,617 + Ac3H11_3684 0.65 -0.5
42,617 + Ac3H11_3684 0.65 -0.5
42,618 - Ac3H11_3684 0.65 -1.0
42,618 - Ac3H11_3684 0.65 -0.9
42,628 + Ac3H11_3684 0.66 +0.2
42,628 + Ac3H11_3684 0.66 +0.5
42,628 + Ac3H11_3684 0.66 -0.5
42,628 + Ac3H11_3684 0.66 +0.6
42,628 + Ac3H11_3684 0.66 -0.5
42,628 + Ac3H11_3684 0.66 -1.4
42,628 + Ac3H11_3684 0.66 +0.0
42,628 + Ac3H11_3684 0.66 -1.5
42,628 + Ac3H11_3684 0.66 -0.9
42,628 + Ac3H11_3684 0.66 +0.1
42,629 - Ac3H11_3684 0.66 -0.4
42,629 - Ac3H11_3684 0.66 +1.1
42,629 - Ac3H11_3684 0.66 +0.3
42,629 - Ac3H11_3684 0.66 -0.1
42,629 - Ac3H11_3684 0.66 +0.6
42,629 - Ac3H11_3684 0.66 +3.3
42,629 - Ac3H11_3684 0.66 -0.4
42,629 - Ac3H11_3684 0.66 +0.5
42,629 - Ac3H11_3684 0.66 +0.4
42,633 - Ac3H11_3684 0.67 -0.2
42,647 + Ac3H11_3684 0.68 +0.1
42,647 + Ac3H11_3684 0.68 -0.3
42,647 + Ac3H11_3684 0.68 -0.1
42,647 + Ac3H11_3684 0.68 -2.0
42,647 + Ac3H11_3684 0.68 +0.7
42,672 + Ac3H11_3684 0.69 -0.1
42,673 - Ac3H11_3684 0.70 +0.1
42,691 + Ac3H11_3684 0.71 +0.5
42,691 + Ac3H11_3684 0.71 +0.1
42,691 + Ac3H11_3684 0.71 -0.0
42,691 + Ac3H11_3684 0.71 -0.4
42,692 - Ac3H11_3684 0.71 +0.2
42,692 - Ac3H11_3684 0.71 +0.1
42,759 + Ac3H11_3684 0.76 +0.4
42,759 + Ac3H11_3684 0.76 +0.6
42,921 + Ac3H11_3684 0.88 +0.3
42,922 - Ac3H11_3684 0.88 -1.4
42,922 - Ac3H11_3684 0.88 -0.1
43,038 + -0.0
43,038 + +1.6
43,039 - -1.3
43,042 + +0.2
43,042 + +0.3
43,043 - +0.7
43,043 - +0.2
43,096 + -2.1
43,097 - -1.1
43,097 - +0.2
43,150 + -0.6
43,151 - -0.5
43,186 - +0.4
43,189 + -1.1
43,189 + +0.2
43,189 + -0.5
43,190 - -1.3
43,190 - -0.8
43,205 + +0.1
43,205 + +0.2
43,205 + -0.3
43,205 + -0.0
43,205 + -0.2
43,205 + +0.2
43,205 + +0.4
43,205 + +0.5
43,206 - -1.7
43,206 - -0.5
43,206 - -0.7
43,206 - +0.1
43,224 + -0.9
43,224 + +0.9
43,224 + -0.0
43,228 + -1.4
43,229 - -0.4
43,229 - +0.6
43,229 - -0.7
43,229 - -0.4
43,229 - +0.1
43,241 - +0.8
43,241 - +0.2
43,394 + -1.3
43,394 + +0.7
43,522 - Ac3H11_3685 0.19 -0.4
43,673 + Ac3H11_3685 0.41 +1.2
43,673 + Ac3H11_3685 0.41 +0.5
43,673 + Ac3H11_3685 0.41 -0.5
43,673 + Ac3H11_3685 0.41 -0.1
43,673 + Ac3H11_3685 0.41 -0.7
43,673 + Ac3H11_3685 0.41 -0.6
43,673 + Ac3H11_3685 0.41 +0.3
43,674 - Ac3H11_3685 0.41 -0.9
43,674 - Ac3H11_3685 0.41 -0.2
43,674 - Ac3H11_3685 0.41 +0.4
43,674 - Ac3H11_3685 0.41 +0.2
43,674 - Ac3H11_3685 0.41 +0.4
43,674 - Ac3H11_3685 0.41 -0.2
43,674 - Ac3H11_3685 0.41 -0.1
43,910 + Ac3H11_3685 0.76 -0.8
43,910 + Ac3H11_3685 0.76 -0.7
43,910 + Ac3H11_3685 0.76 +1.0
43,911 - Ac3H11_3685 0.76 -0.8
43,940 + Ac3H11_3685 0.80 -0.3
44,096 - -0.6
44,096 - +1.8
44,362 + Ac3H11_3686 0.41 -1.6
44,363 - Ac3H11_3686 0.41 -0.2
44,363 - Ac3H11_3686 0.41 -0.3

Or see this region's nucleotide sequence