Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3603

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3601 and Ac3H11_3602 overlap by 1 nucleotidesAc3H11_3602 and Ac3H11_3603 are separated by 42 nucleotidesAc3H11_3603 and Ac3H11_3604 are separated by 68 nucleotides Ac3H11_3601 - Response regulator receiver protein, at 154,481 to 154,852 _3601 Ac3H11_3602 - Response regulator, at 154,852 to 155,631 _3602 Ac3H11_3603 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 155,674 to 156,474 _3603 Ac3H11_3604 - Probable sensor histidine kinase protein (EC 2.7.3.-), at 156,543 to 159,020 _3604 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2at 154.727 kb on - strand, within Ac3H11_3601at 154.784 kb on + strand, within Ac3H11_3601at 154.784 kb on + strand, within Ac3H11_3601at 154.784 kb on + strand, within Ac3H11_3601at 154.785 kb on - strand, within Ac3H11_3601at 154.785 kb on - strand, within Ac3H11_3601at 154.829 kb on + strandat 154.829 kb on + strandat 154.830 kb on - strandat 154.830 kb on - strandat 154.830 kb on - strandat 154.969 kb on + strand, within Ac3H11_3602at 154.969 kb on + strand, within Ac3H11_3602at 154.970 kb on - strand, within Ac3H11_3602at 155.072 kb on + strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.073 kb on - strand, within Ac3H11_3602at 155.166 kb on + strand, within Ac3H11_3602at 155.166 kb on + strand, within Ac3H11_3602at 155.166 kb on + strand, within Ac3H11_3602at 155.167 kb on - strand, within Ac3H11_3602at 155.167 kb on - strand, within Ac3H11_3602at 155.167 kb on - strand, within Ac3H11_3602at 155.167 kb on - strand, within Ac3H11_3602at 155.629 kb on + strandat 155.646 kb on + strandat 155.646 kb on + strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.647 kb on - strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.721 kb on + strandat 155.722 kb on - strandat 155.722 kb on - strandat 155.722 kb on - strandat 155.729 kb on + strandat 155.729 kb on + strandat 155.730 kb on - strandat 155.812 kb on + strand, within Ac3H11_3603at 155.812 kb on + strand, within Ac3H11_3603at 155.813 kb on - strand, within Ac3H11_3603at 155.813 kb on - strand, within Ac3H11_3603at 155.815 kb on + strand, within Ac3H11_3603at 155.815 kb on + strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.816 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.828 kb on - strand, within Ac3H11_3603at 155.914 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.918 kb on + strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 155.919 kb on - strand, within Ac3H11_3603at 156.034 kb on + strand, within Ac3H11_3603at 156.034 kb on + strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.035 kb on - strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.052 kb on + strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.053 kb on - strand, within Ac3H11_3603at 156.259 kb on + strand, within Ac3H11_3603at 156.260 kb on - strand, within Ac3H11_3603at 156.265 kb on + strand, within Ac3H11_3603at 156.341 kb on - strand, within Ac3H11_3603at 156.347 kb on - strand, within Ac3H11_3603at 156.407 kb on + strandat 156.408 kb on - strandat 156.429 kb on - strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.539 kb on + strandat 156.540 kb on - strandat 156.540 kb on - strandat 156.540 kb on - strandat 156.860 kb on + strand, within Ac3H11_3604at 156.861 kb on - strand, within Ac3H11_3604at 156.946 kb on + strand, within Ac3H11_3604at 156.946 kb on + strand, within Ac3H11_3604at 157.022 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.033 kb on - strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.038 kb on + strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.039 kb on - strand, within Ac3H11_3604at 157.155 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.168 kb on + strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.169 kb on - strand, within Ac3H11_3604at 157.242 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.269 kb on + strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.270 kb on - strand, within Ac3H11_3604at 157.272 kb on - strand, within Ac3H11_3604at 157.417 kb on + strand, within Ac3H11_3604at 157.418 kb on - strand, within Ac3H11_3604

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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154,727 - Ac3H11_3601 0.66 +0.1
154,784 + Ac3H11_3601 0.81 +0.7
154,784 + Ac3H11_3601 0.81 -0.8
154,784 + Ac3H11_3601 0.81 +0.3
154,785 - Ac3H11_3601 0.82 +0.2
154,785 - Ac3H11_3601 0.82 +0.9
154,829 + +0.1
154,829 + +0.0
154,830 - -0.4
154,830 - +0.2
154,830 - -0.3
154,969 + Ac3H11_3602 0.15 -0.1
154,969 + Ac3H11_3602 0.15 -1.4
154,970 - Ac3H11_3602 0.15 +0.4
155,072 + Ac3H11_3602 0.28 +0.2
155,073 - Ac3H11_3602 0.28 -0.2
155,073 - Ac3H11_3602 0.28 -0.4
155,073 - Ac3H11_3602 0.28 -0.6
155,073 - Ac3H11_3602 0.28 -0.2
155,073 - Ac3H11_3602 0.28 -0.4
155,073 - Ac3H11_3602 0.28 +0.5
155,166 + Ac3H11_3602 0.40 +2.2
155,166 + Ac3H11_3602 0.40 -0.2
155,166 + Ac3H11_3602 0.40 -1.3
155,167 - Ac3H11_3602 0.40 +0.4
155,167 - Ac3H11_3602 0.40 +0.6
155,167 - Ac3H11_3602 0.40 -0.2
155,167 - Ac3H11_3602 0.40 -1.7
155,629 + -0.1
155,646 + -0.1
155,646 + +1.3
155,647 - -2.0
155,647 - +0.1
155,647 - -0.1
155,647 - +0.2
155,721 + -0.2
155,721 + +0.0
155,721 + +0.4
155,721 + +0.4
155,722 - -0.7
155,722 - +0.0
155,722 - -0.3
155,729 + +1.0
155,729 + +0.5
155,730 - -0.1
155,812 + Ac3H11_3603 0.17 -0.6
155,812 + Ac3H11_3603 0.17 -0.3
155,813 - Ac3H11_3603 0.17 -1.8
155,813 - Ac3H11_3603 0.17 -2.1
155,815 + Ac3H11_3603 0.18 -0.5
155,815 + Ac3H11_3603 0.18 -2.4
155,816 - Ac3H11_3603 0.18 -0.6
155,816 - Ac3H11_3603 0.18 -1.0
155,816 - Ac3H11_3603 0.18 -0.2
155,816 - Ac3H11_3603 0.18 -0.6
155,828 - Ac3H11_3603 0.19 +0.3
155,828 - Ac3H11_3603 0.19 +0.2
155,828 - Ac3H11_3603 0.19 -0.1
155,914 + Ac3H11_3603 0.30 +1.4
155,918 + Ac3H11_3603 0.30 -0.8
155,918 + Ac3H11_3603 0.30 -0.4
155,918 + Ac3H11_3603 0.30 -0.7
155,918 + Ac3H11_3603 0.30 +0.1
155,918 + Ac3H11_3603 0.30 +0.7
155,919 - Ac3H11_3603 0.31 +0.7
155,919 - Ac3H11_3603 0.31 -0.5
155,919 - Ac3H11_3603 0.31 -0.3
155,919 - Ac3H11_3603 0.31 -0.6
155,919 - Ac3H11_3603 0.31 -0.5
155,919 - Ac3H11_3603 0.31 +1.3
156,034 + Ac3H11_3603 0.45 -0.4
156,034 + Ac3H11_3603 0.45 -0.3
156,035 - Ac3H11_3603 0.45 +0.8
156,035 - Ac3H11_3603 0.45 -0.2
156,035 - Ac3H11_3603 0.45 -1.8
156,052 + Ac3H11_3603 0.47 -1.3
156,052 + Ac3H11_3603 0.47 -0.4
156,052 + Ac3H11_3603 0.47 +1.3
156,052 + Ac3H11_3603 0.47 -0.2
156,052 + Ac3H11_3603 0.47 -0.4
156,053 - Ac3H11_3603 0.47 -0.5
156,053 - Ac3H11_3603 0.47 +0.9
156,053 - Ac3H11_3603 0.47 +0.6
156,053 - Ac3H11_3603 0.47 -0.4
156,053 - Ac3H11_3603 0.47 +0.6
156,053 - Ac3H11_3603 0.47 -1.4
156,053 - Ac3H11_3603 0.47 -0.3
156,053 - Ac3H11_3603 0.47 -1.1
156,053 - Ac3H11_3603 0.47 -0.2
156,259 + Ac3H11_3603 0.73 -1.9
156,260 - Ac3H11_3603 0.73 +0.3
156,265 + Ac3H11_3603 0.74 +0.6
156,341 - Ac3H11_3603 0.83 -0.5
156,347 - Ac3H11_3603 0.84 -0.2
156,407 + -0.6
156,408 - +0.2
156,429 - -1.3
156,539 + +0.8
156,539 + -0.1
156,539 + +1.1
156,539 + +0.4
156,539 + +0.1
156,539 + +0.4
156,539 + +0.7
156,540 - -0.7
156,540 - +0.8
156,540 - -0.2
156,860 + Ac3H11_3604 0.13 -0.3
156,861 - Ac3H11_3604 0.13 -1.4
156,946 + Ac3H11_3604 0.16 -0.7
156,946 + Ac3H11_3604 0.16 +0.1
157,022 - Ac3H11_3604 0.19 -1.4
157,033 - Ac3H11_3604 0.20 -0.1
157,033 - Ac3H11_3604 0.20 -0.8
157,033 - Ac3H11_3604 0.20 -0.0
157,033 - Ac3H11_3604 0.20 -0.0
157,033 - Ac3H11_3604 0.20 +0.0
157,033 - Ac3H11_3604 0.20 -0.2
157,038 + Ac3H11_3604 0.20 +0.6
157,038 + Ac3H11_3604 0.20 -1.3
157,038 + Ac3H11_3604 0.20 -0.0
157,038 + Ac3H11_3604 0.20 -0.4
157,039 - Ac3H11_3604 0.20 +0.3
157,039 - Ac3H11_3604 0.20 -0.0
157,039 - Ac3H11_3604 0.20 -0.1
157,039 - Ac3H11_3604 0.20 -1.9
157,155 + Ac3H11_3604 0.25 +0.7
157,168 + Ac3H11_3604 0.25 -0.2
157,168 + Ac3H11_3604 0.25 +0.5
157,168 + Ac3H11_3604 0.25 +1.9
157,168 + Ac3H11_3604 0.25 -1.1
157,169 - Ac3H11_3604 0.25 +0.2
157,169 - Ac3H11_3604 0.25 +0.0
157,169 - Ac3H11_3604 0.25 -0.5
157,242 + Ac3H11_3604 0.28 +0.5
157,269 + Ac3H11_3604 0.29 -0.5
157,269 + Ac3H11_3604 0.29 +0.9
157,269 + Ac3H11_3604 0.29 +1.1
157,269 + Ac3H11_3604 0.29 -0.6
157,270 - Ac3H11_3604 0.29 -0.9
157,270 - Ac3H11_3604 0.29 -0.2
157,270 - Ac3H11_3604 0.29 +0.8
157,272 - Ac3H11_3604 0.29 -0.1
157,417 + Ac3H11_3604 0.35 -1.5
157,418 - Ac3H11_3604 0.35 -0.6

Or see this region's nucleotide sequence