Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3524 and Ac3H11_3525 are separated by 96 nucleotides Ac3H11_3525 and Ac3H11_3526 overlap by 36 nucleotides Ac3H11_3526 and Ac3H11_3527 are separated by 115 nucleotides
Ac3H11_3524 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 70,186 to 71,193
_3524
Ac3H11_3525 - hypothetical protein, at 71,290 to 71,421
_3525
Ac3H11_3526 - Transcriptional regulator, LysR family, at 71,386 to 72,324
_3526
Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925
_3527
Position (kb)
71
72
73 Strain fitness (log2 ratio)
-1
0
1 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.493 kb on + strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.494 kb on - strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.532 kb on + strand, within Ac3H11_3524 at 70.533 kb on - strand, within Ac3H11_3524 at 70.605 kb on - strand, within Ac3H11_3524 at 71.163 kb on + strand at 71.163 kb on + strand at 71.163 kb on + strand at 71.164 kb on - strand at 71.164 kb on - strand at 71.291 kb on + strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.292 kb on - strand at 71.349 kb on + strand, within Ac3H11_3525 at 71.595 kb on + strand, within Ac3H11_3526 at 71.596 kb on - strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.961 kb on + strand, within Ac3H11_3526 at 71.993 kb on - strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.157 kb on + strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.158 kb on - strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.217 kb on + strand, within Ac3H11_3526 at 72.270 kb on + strand at 72.322 kb on + strand at 72.338 kb on - strand at 72.457 kb on + strand at 73.109 kb on - strand at 73.109 kb on - strand at 73.187 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 70,493 + Ac3H11_3524 0.30 -0.5 70,493 + Ac3H11_3524 0.30 -0.8 70,493 + Ac3H11_3524 0.30 -0.2 70,493 + Ac3H11_3524 0.30 -0.1 70,494 - Ac3H11_3524 0.31 +0.7 70,494 - Ac3H11_3524 0.31 -0.2 70,494 - Ac3H11_3524 0.31 -0.2 70,494 - Ac3H11_3524 0.31 +0.7 70,494 - Ac3H11_3524 0.31 +0.7 70,494 - Ac3H11_3524 0.31 +0.5 70,494 - Ac3H11_3524 0.31 +0.1 70,532 + Ac3H11_3524 0.34 -0.4 70,532 + Ac3H11_3524 0.34 -0.6 70,532 + Ac3H11_3524 0.34 +0.9 70,532 + Ac3H11_3524 0.34 +0.8 70,532 + Ac3H11_3524 0.34 +0.1 70,533 - Ac3H11_3524 0.34 -0.4 70,605 - Ac3H11_3524 0.42 -0.3 71,163 + +0.6 71,163 + -0.9 71,163 + +0.1 71,164 - -0.8 71,164 - -0.1 71,291 + -0.4 71,292 - +0.8 71,292 - +0.8 71,292 - +0.5 71,349 + Ac3H11_3525 0.45 +0.5 71,595 + Ac3H11_3526 0.22 +0.7 71,596 - Ac3H11_3526 0.22 -0.7 71,961 + Ac3H11_3526 0.61 -0.3 71,961 + Ac3H11_3526 0.61 +0.8 71,993 - Ac3H11_3526 0.65 -0.4 72,157 + Ac3H11_3526 0.82 +0.3 72,157 + Ac3H11_3526 0.82 +1.0 72,157 + Ac3H11_3526 0.82 -1.6 72,158 - Ac3H11_3526 0.82 -0.4 72,158 - Ac3H11_3526 0.82 +0.0 72,158 - Ac3H11_3526 0.82 -0.7 72,217 + Ac3H11_3526 0.88 +0.5 72,217 + Ac3H11_3526 0.88 +0.4 72,217 + Ac3H11_3526 0.88 -0.9 72,270 + -1.1 72,322 + +1.5 72,338 - -1.2 72,457 + +0.1 73,109 - -0.1 73,109 - +0.9 73,187 - +0.8
Or see this region's nucleotide sequence